RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA713989", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA713989 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6295259 6295259 PRJNA713989_S_NODE_10865_length_173_cov_1.233871_g10805_i0 PRJNA713989 10865 173 1.233871 2.13459683 Isosphaera 127 Bacteria Bacteria 241 2.8900000000000007e-59   NTclustered gi|470487262|ref|NR_076810.1| 128 g10805 i0 93.252 221.121387283237 163 11 94 0 1 163 1665 1503 Isosphaera pallida strain IS1B 23S ribosomal RNA gene, complete sequence blastn 38254 241 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Isosphaera Isosphaera pallida
32612688 32612688 PRJNA713989_S_NODE_14680_length_152_cov_3.786408_g14620_i0 PRJNA713989 14680 152 3.786408 5.75534016 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.0277   NR MBN8643811.1 2026780 g14620 i0 40 0.888157894736842 45 25 88.8 1 10 144 283 325 MBN8643811.1 radical SAM family heme chaperone HemW [Planctomycetota bacterium] diamond 135 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;