RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA713989" and tax_clade = "FCB group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA713989 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
703354 703354 PRJNA713989_S_NODE_12681_length_165_cov_0.879310_g12621_i0 PRJNA713989 12681 165 0.87931 1.4508615 Epilithonimonas vandammei 2487072 Bacteria Bacteria 283 4.4899999999999995e-72   NTclustered gi|1527187866|gb|CP034161.1| 2487072 g12621 i0 97.576 2.95757575757576 165 4 100 0 1 165 1494607 1494443 Epilithonimonas vandammei strain F5649 chromosome, complete genome blastn 488 283 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas vandammei
2466544 2466544 PRJNA713989_S_NODE_6342_length_214_cov_0.927273_g6282_i0 PRJNA713989 6342 214 0.927273 1.98436422 Chitinophagaceae 563835 Bacteria Bacteria 379 7.609999999999999e-101   NTclustered gi|570743502|gb|CP007035.1| 929713 g6282 i0 98.598 270.070093457944 214 3 100 0 1 214 2224569 2224356 Niabella soli DSM 19437, complete genome blastn 57795 379 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niabella Niabella soli
30715320 30715320 PRJNA713989_S_NODE_11074_length_171_cov_4.377049_g11014_i0 PRJNA713989 11074 171 4.377049 7.48475379 Saprospiraceae bacterium 2202734 Bacteria Bacteria 42 0.0264   NR MBK8391206.1 2202734 g11014 i0 32.8 1.01754385964912 58 35 94.7 1 9 170 473 530 MBK8391206.1 fibronectin type III domain-containing protein [Saprospiraceae bacterium] diamond 174 42 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae   Saprospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;