RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA706190" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA706190 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10906715 10906715 PRJNA706190_P_NODE_23489_length_200_cov_2.112583_g23353_i0 PRJNA706190 23489 200 2.112583 4.225166 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 331 1.99e-86   NTclustered gi|256009645|gb|GQ374534.1| 112090 g23353 i0 96.5 83.395 200 7 100 0 1 200 185 384 Aphanomyces astaci strain Gb04 28S ribosomal RNA gene, partial sequence blastn 16679 331 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32106613 32106613 PRJNA706190_P_NODE_32358_length_187_cov_1.137681_g32222_i0 PRJNA706190 32358 187 1.137681 2.12746347 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0102   NR OWZ04601.1 4795 g32222 i0 37.9 1.82887700534759 58 29 93 2 14 187 17 67 OWZ04601.1 hypothetical protein PHMEG_00023469 [Phytophthora megakarya] diamond 342 42.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;