RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA706190", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA706190 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27241470 27241470 PRJNA706190_P_NODE_11463_length_230_cov_1.834254_g11327_i0 PRJNA706190 11463 230 1.834254 4.2187842 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 95.1 3.24e-21   NR HEY8279112.1 3034175 g11327 i0 60.5 0.991304347826087 76 28 99.1 1 1 228 224 297 HEY8279112.1 cyclic nucleotide-binding domain-containing protein [Bdellovibrionota bacterium] diamond 228 95.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28283376 28283376 PRJNA706190_P_NODE_71886_length_165_cov_1.344828_g71750_i0 PRJNA706190 71886 165 1.344828 2.2189662 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 95.5 1.7100000000000003e-21   NR MFN9066465.1 2053517 g71750 i0 77.4 0.963636363636364 53 12 96.4 0 161 3 158 210 MFN9066465.1 tyrosine-type recombinase/integrase [Bdellovibrionales bacterium] diamond 159 95.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29262221 29262221 PRJNA706190_P_NODE_35909_length_182_cov_1.669173_g35773_i0 PRJNA706190 35909 182 1.669173 3.03789486 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 48.1 2.05e-4   NR HEY8278845.1 3034175 g35773 i0 42.1 0.93956043956044 57 33 94 0 11 181 426 482 HEY8278845.1 C45 family peptidase [Bdellovibrionota bacterium] diamond 171 48.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31600659 31600659 PRJNA706190_P_NODE_69996_length_166_cov_0.888889_g69860_i0 PRJNA706190 69996 166 0.888889 1.47555574 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 83.6 4.64e-17   NR HEY8280408.1 3034175 g69860 i0 73.1 0.939759036144578 52 14 94 0 159 4 128 179 HEY8280408.1 hypothetical protein [Bdellovibrionota bacterium] diamond 156 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;