RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA706190" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA706190 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3253989 3253989 PRJNA706190_P_NODE_24043_length_199_cov_2.060000_g23907_i0 PRJNA706190 24043 199 2.06 4.0994 Acidobacteriota bacterium 1978231 Bacteria Bacteria 87.4 3.69e-18   NR MDQ6893965.1 1978231 g23907 i0 67.2 8.33668341708543 64 14 96.5 1 6 197 694 750 MDQ6893965.1 glucosidase [Acidobacteriota bacterium] diamond 1659 87.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
18554411 18554411 PRJNA706190_P_NODE_2615_length_335_cov_2.611888_g2479_i0 PRJNA706190 2615 335 2.611888 8.7498248 Chloracidobacterium validum 2821543 Bacteria Bacteria 342 1.67e-89   NTclustered gi|2033659757|gb|CP072648.1| 2821543 g2479 i0 87.542 49.3253731343284 297 35 88 2 24 319 1945018 1944723 Chloracidobacterium validum strain BV2-C chromosome 1, complete sequence blastn 16524 342 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium Chloracidobacterium validum
26830459 26830459 PRJNA706190_P_NODE_51561_length_169_cov_0.866667_g51425_i0 PRJNA706190 51561 169 0.866667 1.46466723 Acidobacteriota bacterium 1978231 Bacteria Bacteria 41.2 0.0491   NR HYK91103.1 1978231 g51425 i0 52.9 0.603550295857988 34 14 56.8 1 121 26 120 153 HYK91103.1 hypothetical protein [Acidobacteriota bacterium] diamond 102 41.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;