RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA706190" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA706190 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28409990 28409990 PRJNA706190_P_NODE_12906_length_225_cov_1.602273_g12770_i0 PRJNA706190 12906 225 1.602273 3.60511425 Baboon endogenous virus strain M7 11764 Viruses Viruses 149 2.1e-44   NR YP_009109693.1 11764 g12770 i0 93.3 4 75 5 100 0 225 1 10 84 YP_009109693.1 protease [Baboon endogenous virus strain M7] diamond 900 149 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Baboon endogenous virus
29862331 29862331 PRJNA706190_P_NODE_9711_length_238_cov_1.677249_g9575_i0 PRJNA706190 9711 238 1.677249 3.99185262 Baboon endogenous virus strain M7 11764 Viruses Viruses 159 3.76e-43   NR YP_009109689.1 11764 g9575 i0 100 5.97478991596639 79 0 99.6 0 238 2 1155 1233 YP_009109689.1 gag-pol precursor polyprotein [Baboon endogenous virus strain M7] diamond 1422 159 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Baboon endogenous virus
31031599 31031599 PRJNA706190_P_NODE_33535_length_186_cov_0.905109_g33399_i0 PRJNA706190 33535 186 0.905109 1.68350274 Baboon endogenous virus strain M7 11764 Viruses Viruses 89 9.38e-19   NR YP_009109689.1 11764 g33399 i0 93.6 3.01612903225806 47 3 75.8 0 141 1 970 1016 YP_009109689.1 gag-pol precursor polyprotein [Baboon endogenous virus strain M7] diamond 561 89 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Baboon endogenous virus
31284102 31284102 PRJNA706190_P_NODE_36575_length_182_cov_0.992481_g36439_i0 PRJNA706190 36575 182 0.992481 1.80631542 Human endogenous retrovirus K 45617 Viruses Viruses 72.4 1.11e-13   NR ABA28250.1 45617 g36439 i0 53.3 6.90659340659341 60 28 98.9 0 3 182 52 111 ABA28250.1 protease, partial [Human endogenous retrovirus K] diamond 1257 72.8 0.994505494505495 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;