RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA706190" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA706190 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24929237 24929237 PRJNA706190_P_NODE_39840_length_177_cov_2.187500_g39704_i0 PRJNA706190 39840 177 2.1875 3.871875 Fusobacterium gonidiaformans 849 Bacteria Bacteria 274 2.93e-69   NTclustered gi|1370530246|gb|CP028106.1| 469615 g39704 i0 98.71 433.593220338983 155 1 88 1 23 177 1982 1829 Fusobacterium gonidiaformans ATCC 25563 chromosome, complete genome blastn 76746 274 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans
27020259 27020259 PRJNA706190_P_NODE_66462_length_166_cov_0.888889_g66326_i0 PRJNA706190 66462 166 0.888889 1.47555574 Fusobacterium necrophorum 859 Bacteria Bacteria 40.8 0.0168   NR WP_187105728.1 859 g66326 i0 56.4 1.40963855421687 39 16 68.7 1 116 3 50 88 WP_187105728.1 hypothetical protein, partial [Fusobacterium necrophorum] diamond 234 40.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
27241471 27241471 PRJNA706190_P_NODE_60163_length_167_cov_0.881356_g60027_i0 PRJNA706190 60163 167 0.881356 1.47186452 Leptotrichia sp. 104608 Bacteria Bacteria 101 1.3399999999999999e-25   NR MBF1336550.1 104608 g60027 i0 100 0.988023952095808 55 0 98.8 0 3 167 4 58 MBF1336550.1 hypothetical protein [Leptotrichia sp.] diamond 165 101 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;