RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA706190", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA706190 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10906693 10906693 PRJNA706190_P_NODE_14669_length_220_cov_1.204678_g14533_i0 PRJNA706190 14669 220 1.204678 2.6502916 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 401 1.6799999999999993e-107   NTclustered gi|56755654|gb|AY814274.1| 6182 g14533 i0 99.545 99.0409090909091 220 1 100 0 1 220 297 78 Schistosoma japonicum SJCHGC09168 protein mRNA, partial cds blastn 21789 401 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
16494053 16494053 PRJNA706190_P_NODE_6253_length_262_cov_1.615023_g6117_i0 PRJNA706190 6253 262 1.615023 4.23136026 Metazoa 33208 Platyhelminthes Platyhelminthes 473 4.31e-129   NTclustered gi|60687567|gb|AY914896.1| 6182 g6117 i0 99.237 10.8435114503817 262 2 100 0 1 262 639 378 Schistosoma japonicum non-histone chromosomal protein HMG-17 mRNA, partial cds blastn 2841 473 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;