RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA706190", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA706190 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31094481 31094481 PRJNA706190_P_NODE_14275_length_221_cov_1.209302_g14139_i0 PRJNA706190 14275 221 1.209302 2.67255742 Gemmatimonas sp. 1962908 Bacteria Bacteria 44.7 0.00481   NR WP_309672011.1 1962908 g14139 i0 39.6 0.65158371040724 48 29 65.2 0 217 74 175 222 WP_309672011.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein, partial [Gemmatimonas sp.] diamond 144 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
32201635 32201635 PRJNA706190_P_NODE_83418_length_163_cov_0.912281_g83282_i0 PRJNA706190 83418 163 0.912281 1.48701803 Gemmatimonas sp. UBA7669 1946568 Bacteria Bacteria 96.3 1.5600000000000002e-21   NR WP_291156586.1 1946568 g83282 i0 98.1 0.975460122699387 53 1 97.5 0 3 161 111 163 WP_291156586.1 AMP-binding protein [Gemmatimonas sp. UBA7669] diamond 159 96.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;