RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA704949" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA704949 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2463626 2463626 PRJNA704949_P_NODE_2092822_length_164_cov_1.356522_g2077483_i0 PRJNA704949 2092822 164 1.356522 2.22469608 root 1 Root_unresolved Root_unresolved 196 5.98e-46   NTclustered gi|634005687|gb|KF269355.1| 5722 g2077483 i0 88.415 8.71341463414634 164 17 99 2 1 163 2125 1963 Trichomonas vaginalis strain Tor-A cation-transporting E1-E2 ATPase (TVAG_243570) gene, complete cds blastn 1429 196 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31853051 31853051 PRJNA704949_P_NODE_1840337_length_175_cov_1.071429_g1824998_i0 PRJNA704949 1840337 175 1.071429 1.87500075 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 68.6 8.9e-12   NR XP_067778871.1 135588 g1824998 i0 58.2 0.942857142857143 55 23 94.3 0 11 175 50 104 XP_067778871.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Histomonas meleagridis] diamond 165 68.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;