RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA704949" and tax_phylum = "Nitrospinota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA704949 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16491489 16491489 PRJNA704949_P_NODE_221193_length_561_cov_2.384766_g206868_i0 PRJNA704949 221193 561 2.384766 13.37853726 Pseudomonadati 3379134 Bacteria Bacteria 126 3.2099999999999994e-24   NTclustered gi|1938439011|gb|CP048685.1| 2705533 g206868 i0 97.297 22.6185383244207 74 2 13 0 155 228 79747 79674 MAG: Candidatus Nitronauta litoralis isolate EB chromosome, complete genome blastn 12689 126 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitronauta Candidatus Nitronauta litoralis
26619143 26619143 PRJNA704949_P_NODE_1278981_length_223_cov_1.356322_g1263644_i0 PRJNA704949 1278981 223 1.356322 3.02459806 Bacteria 2 Bacteria Bacteria 108 2.6799999999999998e-25   NR MBI3814466.1 2026769 g1263644 i0 77 7.96412556053812 74 17 99.6 0 222 1 683 756 MBI3814466.1 ABC transporter permease subunit [Nitrospinota bacterium] diamond 1776 109 0.990825688073395 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
28325607 28325607 PRJNA704949_P_NODE_2080186_length_165_cov_0.879310_g2064847_i0 PRJNA704949 2080186 165 0.87931 1.4508615 Pseudomonadati 3379134 Bacteria Bacteria 83.6 5.11e-17   NR MDP6625137.1 2026769 g2064847 i0 71.7 13.4909090909091 53 15 96.4 0 6 164 245 297 MDP6625137.1 chaperonin GroEL [Nitrospinota bacterium] diamond 2226 84.3 0.991696322657177 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
28925542 28925542 PRJNA704949_P_NODE_2197908_length_156_cov_2.429907_g2182569_i0 PRJNA704949 2197908 156 2.429907 3.79065492 Bacteria 2 Bacteria Bacteria 108 5.28e-26   NR WP_005007803.1 35800 g2182569 i0 90.4 6 52 5 100 0 1 156 358 409 WP_005007803.1 MULTISPECIES: DNA cytosine methyltransferase [Nitrospina] diamond 936 108 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina  
29514605 29514605 PRJNA704949_P_NODE_343250_length_462_cov_1.227603_g328290_i0 PRJNA704949 343250 462 1.227603 5.67152586 Nitrospinota bacterium 2026769 Bacteria Bacteria 264 5.86e-84   NR MDH5509366.1 2026769 g328290 i0 79.7 0.993506493506494 153 31 99.4 0 2 460 212 364 MDH5509366.1 DNA cytosine methyltransferase [Nitrospinota bacterium] diamond 459 264 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
29608743 29608743 PRJNA704949_P_NODE_1009730_length_259_cov_1.042857_g994395_i0 PRJNA704949 1009730 259 1.042857 2.70099963 Nitrospinota bacterium 2026769 Bacteria Bacteria 102 2.3299999999999994e-23   NR MBI3328823.1 2026769 g994395 i0 52.9 2.95366795366795 85 38 97.3 2 252 1 150 233 MBI3328823.1 acyl-CoA dehydrogenase family protein [Nitrospinota bacterium] diamond 765 102 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
30051188 30051188 PRJNA704949_P_NODE_1199411_length_232_cov_1.704918_g1184074_i0 PRJNA704949 1199411 232 1.704918 3.95540976 Nitrospinota bacterium 2026769 Bacteria Bacteria 123 2.82e-33   NR RMF88556.1 2026769 g1184074 i0 64.9 3.84051724137931 74 26 95.7 0 222 1 78 151 RMF88556.1 MAG: GNAT family N-acetyltransferase [Nitrospinota bacterium] diamond 891 123 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
30178150 30178150 PRJNA704949_P_NODE_892412_length_279_cov_1.582609_g877078_i0 PRJNA704949 892412 279 1.582609 4.41547911 Nitrospina sp. 2024844 Bacteria Bacteria 41.6 0.0191   NR MBT3509708.1 2024844 g877078 i0 50 0.387096774193548 36 18 38.7 0 141 34 11 46 MBT3509708.1 hypothetical protein [Nitrospina sp.] diamond 108 41.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.
31188910 31188910 PRJNA704949_P_NODE_80555_length_862_cov_1.878229_g68687_i0 PRJNA704949 80555 862 1.878229 16.19033398 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 153 1.6e-39   NR MBL4665164.1 2358456 g68687 i0 31.6 0.981438515081206 282 184 96.4 5 1 831 80 357 MBL4665164.1 hypothetical protein [Nitrospinaceae bacterium] diamond 846 153 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
32148918 32148918 PRJNA704949_P_NODE_1944078_length_169_cov_0.866667_g1928739_i0 PRJNA704949 1944078 169 0.866667 1.46466723 Nitrospinota/Tectimicrobiota group 1802340 Bacteria Bacteria 54.7 7.98e-7   NR TDJ60012.1 2024844 g1928739 i0 66.7 4.42011834319527 36 12 63.9 0 142 35 286 321 TDJ60012.1 MAG: GDP-mannose 4,6-dehydratase [Nitrospina sp.] diamond 747 54.7 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.
32864348 32864348 PRJNA704949_P_NODE_331840_length_469_cov_1.766667_g316913_i0 PRJNA704949 331840 469 1.766667 8.28566823 Nitrospinota bacterium 2026769 Bacteria Bacteria 158 1.19e-43   NR MBI3328823.1 2026769 g316913 i0 61.4 2.46268656716418 127 49 81.2 0 381 1 12 138 MBI3328823.1 acyl-CoA dehydrogenase family protein [Nitrospinota bacterium] diamond 1155 158 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;