RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA704949" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA704949 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14725031 14725031 PRJNA704949_P_NODE_273672_length_511_cov_3.461039_g259002_i0 PRJNA704949 273672 511 3.461039 17.68590929 Ilarvirus PNRSV 3429931 Viruses Viruses 939 0   NTclustered gi|1530829376|gb|MH427285.1| 37733 g259002 i0 99.804 99.9804305283757 511 1 100 0 1 511 337 847 Prunus necrotic ringspot virus isolate PNRSV-RNA3-SA movement protein and coat protein genes, complete cds blastn 51090 939 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Ilarvirus PNRSV
19816065 19816065 PRJNA704949_P_NODE_1396996_length_210_cov_2.260870_g1381658_i0 PRJNA704949 1396996 210 2.26087 4.747827 Tobamovirus rapae 3432887 Viruses Viruses 383 5.75e-102   NTclustered gi|691192970|gb|KM067150.1| 29272 g1381658 i0 99.524 17.947619047619 210 1 100 0 1 210 440 231 Turnip vein-clearing virus isolate Minnesota movement protein (MP) and coat protein (CP) genes, partial cds blastn 3769 383 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus rapae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;