RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA704949" and tax_phylum = "Deferribacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA704949 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9624401 9624401 PRJNA704949_P_NODE_250868_length_531_cov_3.037344_g236309_i0 PRJNA704949 250868 531 3.037344 16.12829664 Pseudomonadati 3379134 Bacteria Bacteria 163 5.65e-43   NR WP_128465934.1 139438 g236309 i0 78.3 4.7909604519774 106 22 59.9 1 529 212 904 1008 WP_128465934.1 efflux RND transporter permease subunit [Geovibrio thiophilus] diamond 2544 164 0.99390243902439 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Geovibrio Geovibrio thiophilus
17273413 17273413 PRJNA704949_P_NODE_2212674_length_150_cov_2.693069_g2197335_i0 PRJNA704949 2212674 150 2.693069 4.0396035 Deferribacter desulfuricans 197162 Bacteria Bacteria 71.3 3.37e-8   NTclustered gi|290753135|dbj|AP011529.1| 639282 g2197335 i0 93.75 154.506666666667 48 2 59 1 97 143 2050690 2050737 Deferribacter desulfuricans SSM1 DNA, complete genome blastn 23176 71.3 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae Deferribacter Deferribacter desulfuricans
29809626 29809626 PRJNA704949_P_NODE_461931_length_401_cov_1.255682_g446720_i0 PRJNA704949 461931 401 1.255682 5.03528482 Pseudomonadati 3379134 Bacteria Bacteria 216 6.71e-69   NR WP_128465930.1 139438 g446720 i0 84.3 4.00997506234414 134 20 99.5 1 2 400 81 214 WP_128465930.1 response regulator [Geovibrio thiophilus] diamond 1608 216 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Geovibrio Geovibrio thiophilus
30936581 30936581 PRJNA704949_P_NODE_65794_length_946_cov_2.164994_g54434_i0 PRJNA704949 65794 946 2.164994 20.48084324 Deferribacteres bacterium 2599930 Bacteria Bacteria 68.2 1.2e-8   NR NOZ69067.1 2599930 g54434 i0 42.7 0.260042283298097 82 44 25.1 1 707 943 119 200 NOZ69067.1 carboxypeptidase regulatory-like domain-containing protein [Deferribacteres bacterium] diamond 246 68.2 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres       Deferribacteres bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;