RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA704949", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 12 ✖

tax_kingdom 1

  • Thermotogati · 12 ✖

bioproject 1

  • PRJNA704949 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2465396 2465396 PRJNA704949_P_NODE_655382_length_334_cov_1.607018_g640056_i0 PRJNA704949 655382 334 1.607018 5.36744012 Cloacibacillus 508459 Bacteria Bacteria 575 1.5099999999999999e-159   NTclustered gi|1050315908|gb|CP016757.1| 1197717 g640056 i0 99.682 4.95808383233533 314 1 94 0 21 334 1266519 1266832 Cloacibacillus porcorum strain CL-84 chromosome, complete genome blastn 1656 575 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus Cloacibacillus porcorum
7069501 7069501 PRJNA704949_P_NODE_1610066_length_192_cov_1.090909_g1594727_i0 PRJNA704949 1610066 192 1.090909 2.09454528 Fretibacterium fastidiosum 651822 Bacteria Bacteria 307 3.2e-79   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g1594727 i0 98.837 1.79166666666667 172 2 90 0 1 172 2645832 2646003 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 344 307 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
17276765 17276765 PRJNA704949_P_NODE_55754_length_1023_cov_16.987680_g10342_i5 PRJNA704949 55754 1023 16.98768 173.7839664 Synergistaceae bacterium 2053624 Bacteria Bacteria 183 1.06e-50   NR MFA5457364.1 2053624 g10342 i5 50.5 0.586510263929619 200 95 58.4 2 1020 424 166 362 MFA5457364.1 transposase [Synergistaceae bacterium] diamond 600 183 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
25415676 25415676 PRJNA704949_P_NODE_364520_length_449_cov_1.967500_g349493_i0 PRJNA704949 364520 449 1.9675 8.834075 Bacteria 2 Bacteria Bacteria 787 0   NTclustered gi|1050315908|gb|CP016757.1| 1197717 g349493 i0 99.767 4.80400890868597 429 1 96 0 1 429 1267268 1266840 Cloacibacillus porcorum strain CL-84 chromosome, complete genome blastn 2157 787 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus Cloacibacillus porcorum
27588951 27588951 PRJNA704949_P_NODE_44284_length_1151_cov_15.139746_g10342_i4 PRJNA704949 44284 1151 15.139746 174.25847646 Synergistaceae bacterium 2053624 Bacteria Bacteria 183 3.44e-50   NR MFA5457364.1 2053624 g10342 i4 50.5 0.52128583840139 200 95 51.9 2 4 600 166 362 MFA5457364.1 transposase [Synergistaceae bacterium] diamond 600 183 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
28409626 28409626 PRJNA704949_P_NODE_18386_length_2076_cov_12.718303_g10342_i1 PRJNA704949 18386 2076 12.718303 264.03197028 Synergistaceae bacterium 2053624 Bacteria Bacteria 310 1.55e-95   NR MFA5457364.1 2053624 g10342 i1 45 0.536127167630058 371 194 53.5 4 1187 78 1 362 MFA5457364.1 transposase [Synergistaceae bacterium] diamond 1113 310 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
28609996 28609996 PRJNA704949_P_NODE_927407_length_272_cov_3.479821_g912073_i0 PRJNA704949 927407 272 3.479821 9.46511312 Jonquetella 428711 Bacteria Bacteria 42.7 0.048   NR WP_008522938.1 428711 g912073 i0 42.9 1.08088235294118 49 28 54 0 9 155 102 150 WP_008522938.1 MULTISPECIES: ABC transporter ATP-binding protein [Jonquetella] diamond 294 42.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Jonquetella  
29841254 29841254 PRJNA704949_P_NODE_1369911_length_213_cov_1.585366_g1354573_i0 PRJNA704949 1369911 213 1.585366 3.37682958 Bacteria 2 Bacteria Bacteria 54.3 2.06e-6   NR WP_050792463.1 81412 g1354573 i0 66.7 5.43661971830986 36 12 50.7 0 5 112 215 250 WP_050792463.1 methyl-accepting chemotaxis protein [Aminomonas paucivorans] diamond 1158 54.7 0.992687385740402 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Aminomonas Aminomonas paucivorans
30304716 30304716 PRJNA704949_P_NODE_17432_length_2170_cov_10.169731_g10342_i0 PRJNA704949 17432 2170 10.169731 220.6831627 Synergistaceae bacterium 2053624 Bacteria Bacteria 183 2.0899999999999999e-47   NR MFA5457364.1 2053624 g10342 i0 50.5 0.276497695852535 200 95 27.5 2 4 600 166 362 MFA5457364.1 transposase [Synergistaceae bacterium] diamond 600 183 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30714973 30714973 PRJNA704949_P_NODE_18454_length_2070_cov_13.243444_g10342_i2 PRJNA704949 18454 2070 13.243444 274.1392908 Synergistaceae bacterium 2053624 Bacteria Bacteria 315 2.45e-97   NR MFA5457364.1 2053624 g10342 i2 45.3 0.53768115942029 371 191 53.3 5 890 1993 1 362 MFA5457364.1 transposase [Synergistaceae bacterium] diamond 1113 315 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
31315462 31315462 PRJNA704949_P_NODE_18455_length_2070_cov_12.938149_g10342_i3 PRJNA704949 18455 2070 12.938149 267.8196843 Synergistaceae bacterium 2053624 Bacteria Bacteria 311 7.459999999999998e-96   NR MFA5457364.1 2053624 g10342 i3 45.7 0.539130434782609 372 188 53.3 7 890 1993 1 362 MFA5457364.1 transposase [Synergistaceae bacterium] diamond 1116 311 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32528686 32528686 PRJNA704949_P_NODE_1151939_length_238_cov_1.761905_g1136603_i0 PRJNA704949 1151939 238 1.761905 4.1933339 Cloacibacillus 508459 Bacteria Bacteria 42.7 0.0337   NR WP_300265332.1 889794 g1136603 i0 41.9 1.08403361344538 43 25 54.2 0 164 36 63 105 WP_300265332.1 ABC transporter substrate-binding protein [uncultured Cloacibacillus sp.] diamond 258 42.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus uncultured Cloacibacillus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;