RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA704949", tax_clade = "SAR86 cluster" and tax_phylum = "Pseudomonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 2 ✖

bioproject 1

  • PRJNA704949 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9629095 9629095 PRJNA704949_P_NODE_752488_length_309_cov_1.400000_g737158_i0 PRJNA704949 752488 309 1.4 4.326 SAR86 cluster bacterium 2030880 Bacteria Bacteria 115 3.63e-21   NTclustered gi|2252310782|gb|CP097968.1| 2030880 g737158 i0 94.595 37.7572815533981 74 4 24 0 70 143 617230 617157 SAR86 cluster bacterium isolate TMED112-A1 chromosome, complete genome blastn 11667 115 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
21589177 21589177 PRJNA704949_P_NODE_1637517_length_190_cov_1.063830_g1622178_i0 PRJNA704949 1637517 190 1.06383 2.021277 SAR86 cluster bacterium 2030880 Bacteria Bacteria 84.7 5.31e-18   NR PCJ41441.1 2030880 g1622178 i0 58.7 3.97894736842105 63 26 99.5 0 2 190 122 184 PCJ41441.1 MAG: vacuolar transporter [SAR86 cluster bacterium] diamond 756 84.7 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;