RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA704949", tax_clade = "Pithoviruses" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 4 ✖

tax_clade 1

  • Pithoviruses · 4 ✖

bioproject 1

  • PRJNA704949 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27410368 27410368 PRJNA704949_P_NODE_388403_length_436_cov_1.478036_g373319_i0 PRJNA704949 388403 436 1.478036 6.44423696 root 1 Root_unresolved Root_unresolved 110 6.53e-26   NR QBK89626.1 2506585 g373319 i0 43.7 1.73394495412844 126 69 85.3 1 435 64 163 288 QBK89626.1 MAG: DNA repair exonuclease [Pithovirus LCPAC001] diamond 756 110 1 Viruses Pithoviruses             Pithovirus LCPAC001
29010106 29010106 PRJNA704949_P_NODE_645368_length_337_cov_1.444444_g630042_i0 PRJNA704949 645368 337 1.444444 4.86777628 Pithovirus LCPAC4 2506597 Viruses Viruses 124 3.53e-32   NR QBK93439.1 2506597 g630042 i0 51.5 1.72700296735905 97 47 86.4 0 320 30 141 237 QBK93439.1 MAG: 2OG-Fe(II) oxygenase superfamily protein [Pithovirus LCPAC404] diamond 582 124 1 Viruses Pithoviruses             Pithovirus LCPAC404
29041192 29041192 PRJNA704949_P_NODE_1599788_length_193_cov_1.027778_g1584449_i0 PRJNA704949 1599788 193 1.027778 1.98361154 Pithovirus LCPAC4 2506595 Viruses Viruses 54.7 1.11e-6   NR QBK92445.1 2506595 g1584449 i0 42.1 1.75647668393782 57 31 88.6 2 191 21 282 336 QBK92445.1 MAG: DNA primase [Pithovirus LCPAC401] diamond 339 54.7 1 Viruses Pithoviruses             Pithovirus LCPAC401
29482783 29482783 PRJNA704949_P_NODE_1687670_length_186_cov_1.138686_g1672331_i0 PRJNA704949 1687670 186 1.138686 2.11795596 Solumvirus sp. 2487773 Viruses Viruses 42.7 0.0179   NR AYV86312.1 2487773 g1672331 i0 38.6 0.709677419354839 44 27 71 0 31 162 260 303 AYV86312.1 MAG: hypothetical protein Solumvirus4_10 [Solumvirus sp.] diamond 132 42.7 1 Viruses Pithoviruses             Solumvirus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;