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contig_metadata

32 rows where bioproject = "PRJNA704949", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 32 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 32 ✖

bioproject 1

  • PRJNA704949 · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
693226 693226 PRJNA704949_P_NODE_1913681_length_170_cov_1.107438_g1898342_i0 PRJNA704949 1913681 170 1.107438 1.8826446 Rotylenchulus reniformis 239373 Nematoda Nematoda 75 3.03e-9   NTclustered gi|264664697|gb|FJ905984.1| 239373 g1898342 i0 97.674 0.252941176470588 43 1 25 0 128 170 523 481 Rotylenchulus reniformis clone 190 microsatellite sequence blastn 43 75 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Rotylenchulus Rotylenchulus reniformis
1967663 1967663 PRJNA704949_P_NODE_1699242_length_185_cov_1.323529_g1683903_i0 PRJNA704949 1699242 185 1.323529 2.44852865 Sudhausia aristotokia 1357959 Nematoda Nematoda 89.8 1.2e-13   NTclustered gi|675118807|gb|KJ877278.1| 1357959 g1683903 i0 84.375 48.7945945945946 96 10 50 5 1 92 1515 1421 Sudhausia aristotokia strain RS9011 28S ribosomal RNA gene, partial sequence blastn 9027 89.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sudhausia Sudhausia aristotokia
4515949 4515949 PRJNA704949_P_NODE_1230904_length_228_cov_2.301676_g1215567_i0 PRJNA704949 1230904 228 2.301676 5.24782128 Strongyloides ratti 34506 Nematoda Nematoda 193 1.15e-44   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g1215567 i0 83.412 107.035087719298 211 31 92 4 3 211 1802 1594 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 24404 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
5791648 5791648 PRJNA704949_P_NODE_1272345_length_224_cov_1.080000_g1257008_i0 PRJNA704949 1272345 224 1.08 2.4192 Rotylenchulus reniformis 239373 Nematoda Nematoda 219 1.85e-52   NTclustered gi|264664993|gb|FJ906280.1| 239373 g1257008 i0 84.783 1.02678571428571 230 22 100 11 1 224 36 258 Rotylenchulus reniformis clone 109 microsatellite sequence blastn 230 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Rotylenchulus Rotylenchulus reniformis
8347249 8347249 PRJNA704949_P_NODE_1999107_length_167_cov_0.881356_g1983768_i0 PRJNA704949 1999107 167 0.881356 1.47186452 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.014   NTclustered gi|1376135035|ref|XM_024647515.1| 34506 g1983768 i0 100 0.167664670658683 28 0 17 0 59 86 915 942 Strongyloides ratti Hypothetical protein (SRAE_1000065600), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14730943 14730943 PRJNA704949_P_NODE_928732_length_272_cov_2.098655_g913398_i0 PRJNA704949 928732 272 2.098655 5.7083416 Nematoda 6231 Nematoda Nematoda 122 2.31e-30   NR KFD70628.1 68888 g913398 i0 65.5 5.72426470588235 87 30 96 0 7 267 38 124 KFD70628.1 hypothetical protein M514_09766 [Trichuris suis] diamond 1557 122 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
15993176 15993176 PRJNA704949_P_NODE_1573793_length_195_cov_0.917808_g1558454_i0 PRJNA704949 1573793 195 0.917808 1.7897256 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.017   NTclustered gi|413006427|emb|Z99281.2| 6239 g1558454 i0 100 0.287179487179487 28 0 14 0 161 188 220576 220549 Caenorhabditis elegans YAC Y57G11C, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22367786 22367786 PRJNA704949_P_NODE_1561758_length_196_cov_0.823129_g1546419_i0 PRJNA704949 1561758 196 0.823129 1.61333284 Meloidogyne 189290 Nematoda Nematoda 62.8 4.38e-10   NR KAF7638115.1 189291 g1546419 i0 66.7 4.19387755102041 36 12 55.1 0 155 48 135 170 KAF7638115.1 E3 ubiquitin-protein ligase [Meloidogyne graminicola] diamond 822 62.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
23655384 23655384 PRJNA704949_P_NODE_966959_length_266_cov_0.958525_g951624_i0 PRJNA704949 966959 266 0.958525 2.5496765 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.024   NTclustered gi|687865570|emb|LK927557.1| 6239 g951624 i0 100 0.210526315789474 28 0 11 0 155 182 260521 260548 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000025 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25414645 25414645 PRJNA704949_P_NODE_2013720_length_166_cov_3.401709_g1998381_i0 PRJNA704949 2013720 166 3.401709 5.64683694 Opisthokonta 33154 Nematoda Nematoda 56.5 0.001   NTclustered gi|373218635|emb|FO080224.1| 6239 g1998381 i0 100 22.0120481927711 30 0 36 0 12 41 13987 14016 Caenorhabditis elegans Cosmid F53A3, complete sequence blastn 3654 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26777767 26777767 PRJNA704949_P_NODE_780481_length_302_cov_2.197628_g765149_i0 PRJNA704949 780481 302 2.197628 6.63683656 root 1 Root_unresolved Root_unresolved 121 2.02e-29   NR KFD60737.1 68888 g765149 i0 62.4 8.91059602649007 93 34 91.4 1 25 300 483 575 KFD60737.1 hypothetical protein M514_10093 [Trichuris suis] diamond 2691 122 0.991803278688525 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
27430919 27430919 PRJNA704949_P_NODE_1523323_length_199_cov_1.186667_g1507984_i0 PRJNA704949 1523323 199 1.186667 2.36146733 Trichinella spiralis 6334 Nematoda Nematoda 77.4 1.22e-14   NR XP_003377902.1 6334 g1507984 i0 50.8 6.46733668341709 65 32 98 0 3 197 540 604 XP_003377902.1 putative integrase core domain protein [Trichinella spiralis] diamond 1287 77.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
27493725 27493725 PRJNA704949_P_NODE_1118343_length_243_cov_1.072165_g1103007_i0 PRJNA704949 1118343 243 1.072165 2.60536095 Trichinella sp. T6 92179 Nematoda Nematoda 44.3 0.0105   NR KRX84605.1 92179 g1103007 i0 50 0.567901234567901 46 22 56.8 1 242 105 576 620 KRX84605.1 hypothetical protein T06_295 [Trichinella sp. T6] diamond 138 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T6
27536429 27536429 PRJNA704949_P_NODE_1780023_length_179_cov_1.200000_g1764684_i0 PRJNA704949 1780023 179 1.2 2.148 Nematoda 6231 Nematoda Nematoda 42.7 0.00618   NR CAC05515.1 119101 g1764684 i0 47.9 3.93854748603352 48 23 78.8 2 151 11 61 107 CAC05515.1 cytochrome oxidase subunit I, partial [Anatrichosoma haycocki] diamond 705 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Anatrichosomatidae Anatrichosoma Anatrichosoma haycocki
27715335 27715335 PRJNA704949_P_NODE_1815344_length_176_cov_2.047244_g1800005_i0 PRJNA704949 1815344 176 2.047244 3.60314944 Diploscapter pachys 2018661 Nematoda Nematoda 42.4 0.021   NR PAV90747.1 2018661 g1800005 i0 50 0.545454545454545 32 16 54.5 0 1 96 446 477 PAV90747.1 hypothetical protein WR25_01610 [Diploscapter pachys] diamond 96 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
27778268 27778268 PRJNA704949_P_NODE_1955504_length_168_cov_1.361345_g1940165_i0 PRJNA704949 1955504 168 1.361345 2.2870596 Trichuris suis 68888 Nematoda Nematoda 41.6 0.0338   NR KFD46673.1 68888 g1940165 i0 56.3 0.571428571428571 32 12 53.6 1 124 35 263 294 KFD46673.1 hypothetical protein M513_12441 [Trichuris suis] diamond 96 41.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
28452241 28452241 PRJNA704949_P_NODE_833066_length_291_cov_1.289256_g817732_i0 PRJNA704949 833066 291 1.289256 3.75173496 Metazoa 33208 Nematoda Nematoda 114 7.5599999999999995e-28   NR KHJ91075.1 61180 g817732 i0 59.5 2.6701030927835 84 33 85.6 1 43 291 243 326 KHJ91075.1 WD domain, G-beta repeat protein [Oesophagostomum dentatum] diamond 777 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Oesophagostomum Oesophagostomum dentatum
28567573 28567573 PRJNA704949_P_NODE_524827_length_376_cov_1.431193_g509541_i0 PRJNA704949 524827 376 1.431193 5.38128568 Dracunculus medinensis 318479 Nematoda Nematoda 48.1 0.00211   NR VDN60824.1 318479 g509541 i0 24.2 1.18882978723404 149 53 99.7 3 2 376 167 279 VDN60824.1 unnamed protein product [Dracunculus medinensis] diamond 447 48.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
29619860 29619860 PRJNA704949_P_NODE_551790_length_366_cov_2.129338_g536483_i0 PRJNA704949 551790 366 2.129338 7.79337708 Rhabditida 6236 Nematoda Nematoda 54.7 8.82e-6   NR VDK57221.1 6269 g536483 i0 66.7 1.37704918032787 36 12 29.5 0 232 339 62 97 VDK57221.1 unnamed protein product [Anisakis simplex] diamond 504 55.1 0.992740471869329 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
29683072 29683072 PRJNA704949_P_NODE_1856630_length_173_cov_2.516129_g1841291_i0 PRJNA704949 1856630 173 2.516129 4.35290317 root 1 Root_unresolved Root_unresolved 51.6 1.08e-5   NR KAE9420905.1 6313 g1841291 i0 78.8 9.69364161849711 33 7 57.2 0 99 1 287 319 KAE9420905.1 hypothetical protein Angca_004007 [Angiostrongylus cantonensis] diamond 1677 51.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
29703477 29703477 PRJNA704949_P_NODE_1166890_length_236_cov_1.946524_g1151553_i0 PRJNA704949 1166890 236 1.946524 4.59379664 Dirofilaria immitis 6287 Nematoda Nematoda 61.2 1.06e-8   NR MCP9265238.1 6287 g1151553 i0 43.9 1.67796610169492 66 34 80.1 1 231 43 1682 1747 MCP9265238.1 Bm2, isoform a [Dirofilaria immitis] diamond 396 61.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
29735199 29735199 PRJNA704949_P_NODE_1253390_length_226_cov_1.175141_g1238053_i0 PRJNA704949 1253390 226 1.175141 2.65581866 Aphelenchoides fujianensis 1052528 Nematoda Nematoda 47.8 5.14e-4   NR KAI6218329.1 1052528 g1238053 i0 58.1 0.570796460176991 43 17 55.8 1 223 98 156 198 KAI6218329.1 Histone deacetylase 6 [Aphelenchoides fujianensis] diamond 129 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis
29746342 29746342 PRJNA704949_P_NODE_449230_length_406_cov_2.330532_g434033_i0 PRJNA704949 449230 406 2.330532 9.46195992 root 1 Root_unresolved Root_unresolved 161 1.6299999999999996e-47   NR KFD59252.1 68888 g434033 i0 60.3 5.51970443349754 126 49 93.1 1 387 10 58 182 KFD59252.1 hypothetical protein M514_28570, partial [Trichuris suis] diamond 2241 162 0.993827160493827 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30272996 30272996 PRJNA704949_P_NODE_1818912_length_176_cov_1.637795_g1803573_i0 PRJNA704949 1818912 176 1.637795 2.8825192 Trichinella patagoniensis 990121 Nematoda Nematoda 53.1 2.27e-7   NR KRY03684.1 990121 g1803573 i0 54.5 0.75 44 20 75 0 22 153 39 82 KRY03684.1 hypothetical protein T12_10847 [Trichinella patagoniensis] diamond 132 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella patagoniensis
30347266 30347266 PRJNA704949_P_NODE_1042532_length_254_cov_1.014634_g1027196_i0 PRJNA704949 1042532 254 1.014634 2.57717036 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 137 2.7399999999999996e-35   NR XP_024504697.1 34506 g1027196 i0 65.5 100.44094488189 84 29 99.2 0 1 252 77 160 XP_024504697.1 BEACH domain and WD40 repeat and WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein [Strongyloides ratti] diamond 25512 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30347301 30347301 PRJNA704949_P_NODE_1384832_length_212_cov_0.957055_g1369494_i0 PRJNA704949 1384832 212 0.957055 2.0289566 Heterodera 34509 Nematoda Nematoda 50.8 3.2e-5   NR KAL3070702.1 97005 g1369494 i0 51.4 2.09433962264151 37 18 52.4 0 165 55 174 210 KAL3070702.1 hypothetical protein niasHS_016976 [Heterodera schachtii] diamond 444 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera schachtii
30651845 30651845 PRJNA704949_P_NODE_499713_length_385_cov_2.398810_g484453_i0 PRJNA704949 499713 385 2.39881 9.2354185 Caenorhabditis brenneri 135651 Nematoda Nematoda 45.8 0.0136   NR EGT50408.1 135651 g484453 i0 38.2 1.87012987012987 68 30 53 3 226 23 109 164 EGT50408.1 hypothetical protein CAEBREN_24146 [Caenorhabditis brenneri] diamond 720 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
30683532 30683532 PRJNA704949_P_NODE_582613_length_356_cov_1.524430_g567296_i0 PRJNA704949 582613 356 1.52443 5.4269708 Strongyloides ratti 34506 Nematoda Nematoda 160 1.91e-43   NR XP_024507813.1 34506 g567296 i0 62.5 6.14325842696629 104 39 87.6 0 352 41 483 586 XP_024507813.1 Alkyldihydroxyacetonephosphate synthase, peroxisomal [Strongyloides ratti] diamond 2187 160 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30872931 30872931 PRJNA704949_P_NODE_1726934_length_183_cov_1.164179_g1711595_i0 PRJNA704949 1726934 183 1.164179 2.13044757 Pristionchus pacificus 54126 Nematoda Nematoda 91.3 3.35e-21   NR KAF8365403.1 54126 g1711595 i0 67.2 1 61 20 100 0 183 1 38 98 KAF8365403.1 rpl-17 [Pristionchus pacificus] diamond 183 91.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
31188789 31188789 PRJNA704949_P_NODE_407755_length_426_cov_1.522546_g392633_i0 PRJNA704949 407755 426 1.522546 6.48604596 Toxocara canis 6265 Nematoda Nematoda 46.6 0.00246   NR VDM49964.1 6265 g392633 i0 33.3 0.591549295774648 84 55 59.2 1 290 39 5 87 VDM49964.1 unnamed protein product [Toxocara canis] diamond 252 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32043106 32043106 PRJNA704949_P_NODE_2012458_length_167_cov_0.881356_g1997119_i0 PRJNA704949 2012458 167 0.881356 1.47186452 Auanema sp. JU1783 2878363 Nematoda Nematoda 65.5 1.26e-10   NR CAI4228240.1 2878363 g1997119 i0 81.3 0.574850299401198 32 6 57.5 0 167 72 465 496 CAI4228240.1 unnamed protein product [Auanema sp. JU1783] diamond 96 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
32780429 32780429 PRJNA704949_P_NODE_1926340_length_169_cov_1.300000_g1911001_i0 PRJNA704949 1926340 169 1.3 2.197 Opisthokonta 33154 Nematoda Nematoda 43.9 0.00486   NR MCP9265856.1 6287 g1911001 i0 86.4 9.56804733727811 22 3 39.1 0 168 103 17 38 MCP9265856.1 Guanine nucleotide-binding protein subunit beta-2-like 1 [Dirofilaria immitis] diamond 1617 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;