RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA704949" and tax_clade = "Human papillomavirus types"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 5 ✖

bioproject 1

  • PRJNA704949 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
687260 687260 PRJNA704949_P_NODE_1161181_length_237_cov_1.446809_g1145845_i0 PRJNA704949 1161181 237 1.446809 3.42893733 Human papillomavirus type 221 2200958 Viruses Viruses 403 5.099999999999999e-108   NTclustered gi|1389447866|gb|MH172378.1| 2200958 g1145845 i0 97.854 11.5443037974684 233 5 98 0 4 236 819 587 Human papillomavirus type 221 isolate CT09, complete genome blastn 2736 403 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 221
7075381 7075381 PRJNA704949_P_NODE_335066_length_467_cov_1.717703_g320130_i0 PRJNA704949 335066 467 1.717703 8.02167301 Human papillomavirus type 221 2200958 Viruses Viruses 536 1.0299999999999999e-147   NTclustered gi|1389447866|gb|MH172378.1| 2200958 g320130 i0 89.904 6.29978586723769 416 42 89 0 32 447 5036 5451 Human papillomavirus type 221 isolate CT09, complete genome blastn 2942 536 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 221
17268563 17268563 PRJNA704949_P_NODE_1572394_length_195_cov_1.068493_g1557055_i0 PRJNA704949 1572394 195 1.068493 2.08356135 Human papillomavirus 10566 Viruses Viruses 305 1.17e-78   NTclustered gi|270048228|gb|FJ969898.1| 10566 g1557055 i0 99.405 0.861538461538462 168 1 86 0 1 168 166 333 Human papillomavirus isolate GC05 major capsid protein L1 gene, partial cds blastn 168 305 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
18541004 18541004 PRJNA704949_P_NODE_1409555_length_209_cov_1.625000_g1394217_i0 PRJNA704949 1409555 209 1.625 3.39625 Human papillomavirus type 221 2200958 Viruses Viruses 131 1.05e-33   NR AWK28211.1 2200958 g1394217 i0 89.9 3.96172248803828 69 7 99 0 2 208 302 370 AWK28211.1 E1 protein [Human papillomavirus type 221] diamond 828 131 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 221
32106173 32106173 PRJNA704949_P_NODE_1570138_length_195_cov_1.287671_g1554799_i0 PRJNA704949 1570138 195 1.287671 2.51095845 Human papillomavirus type 221 2200958 Viruses Viruses 129 5.84e-33   NR AWK28211.1 2200958 g1554799 i0 89.1 2.95384615384615 64 7 98.5 0 193 2 369 432 AWK28211.1 E1 protein [Human papillomavirus type 221] diamond 576 129 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 221

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;