RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA703759" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA703759 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3736700 3736700 PRJNA703759_P_NODE_38723_length_250_cov_0.881356_g38247_i0 PRJNA703759 38723 250 0.881356 2.20339 Haladaptatus 367188 Archaea Archaea 108 4.76e-19   NTclustered gi|2471356508|gb|CP120470.1| 3032580 g38247 i0 82.927 1.916 123 18 49 1 1 123 292142 292023 Haladaptatus sp. DYSN1 chromosome, complete genome blastn 479 108 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus sp. DYSN1
4512388 4512388 PRJNA703759_P_NODE_26584_length_279_cov_1.058252_g26108_i0 PRJNA703759 26584 279 1.058252 2.95252308 Methanococcus maripaludis 39152 Archaea Archaea 58.4 5.52e-4   NTclustered gi|1342459100|gb|CP026606.1| 39152 g26108 i0 94.737 0.136200716845878 38 1 14 1 101 138 324531 324495 Methanococcus maripaludis strain DSM 2067 chromosome, complete genome blastn 38 58.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
19036724 19036724 PRJNA703759_P_NODE_35875_length_252_cov_0.871508_g35399_i0 PRJNA703759 35875 252 0.871508 2.19620016 Haladaptatus 367188 Archaea Archaea 52.8 0.023   NTclustered gi|2471356512|gb|CP120472.1| 3032580 g35399 i0 100 0.333333333333333 28 0 11 0 215 242 499684 499711 Haladaptatus sp. DYSN1 plasmid unnamed2, complete sequence blastn 84 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus sp. DYSN1
19811503 19811503 PRJNA703759_P_NODE_39976_length_249_cov_0.886364_g39500_i0 PRJNA703759 39976 249 0.886364 2.20704636 Halalkalicoccus jeotgali 413810 Archaea Archaea 52.8 0.023   NTclustered gi|299123054|gb|CP002062.1| 795797 g39500 i0 96.875 0.1285140562249 32 0 12 1 2 32 2173963 2173994 Halalkalicoccus jeotgali B3, complete genome blastn 32 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
22361456 22361456 PRJNA703759_P_NODE_24178_length_288_cov_1.418605_g23702_i0 PRJNA703759 24178 288 1.418605 4.0855824 Methanobacterium sp. ACI-7 3240853 Archaea Archaea 52.8 0.027   NTclustered gi|2904246484|gb|CP166866.1| 3240853 g23702 i0 100 0.0972222222222222 28 0 10 0 181 208 1982143 1982170 Methanobacterium sp. ACI-7 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. ACI-7
22361850 22361850 PRJNA703759_P_NODE_40878_length_249_cov_0.886364_g40402_i0 PRJNA703759 40878 249 0.886364 2.20704636 Haloplanus sp. GX21 3127120 Archaea Archaea 263 9.56e-66   NTclustered gi|2700851762|gb|CP147874.1| 3127120 g40402 i0 90.547 3.49397590361446 201 16 80 3 52 249 650801 650601 Haloplanus sp. GX21 chromosome, complete genome blastn 870 263 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus sp. GX21
23637131 23637131 PRJNA703759_P_NODE_24979_length_285_cov_1.396226_g24503_i0 PRJNA703759 24979 285 1.396226 3.9792441 Halalkalicoccus jeotgali 413810 Archaea Archaea 222 1.9e-53   NTclustered gi|299123054|gb|CP002062.1| 795797 g24503 i0 80.836 1.00701754385965 287 51 100 4 1 285 1842812 1843096 Halalkalicoccus jeotgali B3, complete genome blastn 287 222 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
27304183 27304183 PRJNA703759_P_NODE_33943_length_254_cov_1.292818_g33467_i0 PRJNA703759 33943 254 1.292818 3.28375772 Natrinema pallidum 69527 Archaea Archaea 40 0.0358   NR WP_152422535.1 69527 g33467 i0 65.2 0.271653543307087 23 8 27.2 0 186 254 6 28 WP_152422535.1 hypothetical protein [Natrinema pallidum] diamond 69 40 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema pallidum
27588426 27588426 PRJNA703759_P_NODE_32244_length_259_cov_1.645161_g31768_i0 PRJNA703759 32244 259 1.645161 4.26096699 Haladaptatus sp. DYF46 2886041 Archaea Archaea 43.5 0.0225   NR WP_303646666.1 2886041 g31768 i0 64.7 0.393822393822394 34 11 39.4 1 248 147 317 349 WP_303646666.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase [Haladaptatus sp. DYF46] diamond 102 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus sp. DYF46
28693622 28693622 PRJNA703759_P_NODE_40527_length_249_cov_0.886364_g40051_i0 PRJNA703759 40527 249 0.886364 2.20704636 Halobacterium sp. KA-4 2896367 Archaea Archaea 54.7 8.49e-8   NR WP_230888317.1 2896367 g40051 i0 82.4 0.409638554216867 34 6 41 0 103 2 1 34 WP_230888317.1 hypothetical protein [Halobacterium sp. KA-4] diamond 102 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. KA-4
29009530 29009530 PRJNA703759_P_NODE_20108_length_309_cov_1.593220_g19632_i0 PRJNA703759 20108 309 1.59322 4.9230498 Halorientalis marina 2931976 Archaea Archaea 43.5 0.0409   NR WP_246986624.1 2931976 g19632 i0 29.8 1.00970873786408 104 63 96.1 4 3 299 78 176 WP_246986624.1 cytochrome P450 [Halorientalis marina] diamond 312 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis marina
29399111 29399111 PRJNA703759_P_NODE_51229_length_242_cov_0.923077_g50753_i0 PRJNA703759 51229 242 0.923077 2.23384634 Halobacteriales 2235 Archaea Archaea 84 1.14e-16   NR WP_276410133.1 2237 g50753 i0 50.6 24.4710743801653 81 37 96.7 1 7 240 550 630 WP_276410133.1 MULTISPECIES: DUF2309 domain-containing protein [Haloarcula] diamond 5922 84.7 0.991735537190083 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula  

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;