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contig_metadata

24 rows where bioproject = "PRJNA703759" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA703759 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3235679 3235679 PRJNA703759_P_NODE_42643_length_247_cov_1.488506_g42167_i0 PRJNA703759 42643 247 1.488506 3.67660982 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 124 9.68e-31   NR MBY0491525.1 2026741 g42167 i0 92.8 0.838056680161943 69 5 83.8 0 207 1 531 599 MBY0491525.1 NAD-dependent DNA ligase LigA [Gemmatimonadaceae bacterium] diamond 207 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
7062511 7062511 PRJNA703759_P_NODE_12166_length_384_cov_1.649518_g11690_i0 PRJNA703759 12166 384 1.649518 6.33414912 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 135 3.5400000000000005e-27   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g11690 i0 73.935 2.51822916666667 399 77 98 22 1 378 233603 233995 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 967 135 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
8337920 8337920 PRJNA703759_P_NODE_45907_length_245_cov_0.906977_g45431_i0 PRJNA703759 45907 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 160 6.979999999999999e-46   NR MBY0489567.1 2026741 g45431 i0 98.8 0.991836734693878 81 1 99.2 0 2 244 58 138 MBY0489567.1 chemotaxis response regulator protein-glutamate methylesterase [Gemmatimonadaceae bacterium] diamond 243 160 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
9612370 9612370 PRJNA703759_P_NODE_10328_length_420_cov_2.469741_g9852_i0 PRJNA703759 10328 420 2.469741 10.3729122 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 111 8.58e-26   NR HEX6615028.1 2448054 g9852 i0 71.2 3.62857142857143 73 21 52.1 0 419 201 248 320 HEX6615028.1 ATP-binding protein [Gemmatimonadales bacterium] diamond 1524 111 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
15986514 15986514 PRJNA703759_P_NODE_12113_length_385_cov_1.823718_g11637_i0 PRJNA703759 12113 385 1.823718 7.0213143 Bacteria 2 Bacteria Bacteria 120 2.5899999999999997e-31   NR MFQ5680324.1 2026742 g11637 i0 64.4 14.9532467532468 90 32 70.1 0 115 384 23 112 MFQ5680324.1 sigma-70 family RNA polymerase sigma factor [Gemmatimonadota bacterium] diamond 5757 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
24911164 24911164 PRJNA703759_P_NODE_50940_length_242_cov_0.923077_g50464_i0 PRJNA703759 50940 242 0.923077 2.23384634 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 146 3.1899999999999993e-40   NR MBY0492540.1 2026741 g50464 i0 97.5 0.991735537190083 80 2 99.2 0 240 1 310 389 MBY0492540.1 chorismate synthase [Gemmatimonadaceae bacterium] diamond 240 146 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27398996 27398996 PRJNA703759_P_NODE_32783_length_257_cov_2.396739_g32307_i0 PRJNA703759 32783 257 2.396739 6.15961923 Gemmatimonas sp. 1962908 Bacteria Bacteria 44.3 0.0116   NR WP_396223237.1 1962908 g32307 i0 33.9 1.52918287937743 56 37 65.4 0 3 170 216 271 WP_396223237.1 PLP-dependent aminotransferase family protein [Gemmatimonas sp.] diamond 393 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
28420571 28420571 PRJNA703759_P_NODE_51566_length_241_cov_3.226190_g51090_i0 PRJNA703759 51566 241 3.22619 7.7751179 Bacteria 2 Bacteria Bacteria 62 4.81e-9   NR PKL93066.1 2013806 g51090 i0 71.4 4.38174273858921 35 10 43.6 0 130 234 17 51 PKL93066.1 MAG: MFS transporter, partial [Gemmatimonadetes bacterium HGW-Gemmatimonadetes-1] diamond 1056 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium HGW-Gemmatimonadetes-1
28503977 28503977 PRJNA703759_P_NODE_34887_length_253_cov_0.866667_g34411_i0 PRJNA703759 34887 253 0.866667 2.19266751 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 54.3 3.38e-6   NR MBY0488958.1 2026741 g34411 i0 92 1.28063241106719 25 2 29.6 0 178 252 2 26 MBY0488958.1 peptide chain release factor 2 [Gemmatimonadaceae bacterium] diamond 324 54.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28819380 28819380 PRJNA703759_P_NODE_36268_length_252_cov_0.871508_g35792_i0 PRJNA703759 36268 252 0.871508 2.19620016 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 115 2.02e-28   NR HEX5576518.1 2448054 g35792 i0 69.8 2.03571428571429 86 23 100 2 1 252 144 228 HEX5576518.1 DbpA RNA binding domain-containing protein [Gemmatimonadales bacterium] diamond 513 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29072487 29072487 PRJNA703759_P_NODE_46228_length_245_cov_0.906977_g45752_i0 PRJNA703759 46228 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 145 4.17e-40   NR MBY0490015.1 2026741 g45752 i0 100 0.991836734693878 81 0 99.2 0 1 243 5 85 MBY0490015.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 243 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29388217 29388217 PRJNA703759_P_NODE_51449_length_242_cov_0.923077_g50973_i0 PRJNA703759 51449 242 0.923077 2.23384634 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 151 1.84e-40   NR MBY0488372.1 2026741 g50973 i0 100 0.991735537190083 80 0 99.2 0 3 242 18 97 MBY0488372.1 DEAD/DEAH box helicase [Gemmatimonadaceae bacterium] diamond 240 151 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29703377 29703377 PRJNA703759_P_NODE_46570_length_245_cov_0.906977_g46094_i0 PRJNA703759 46570 245 0.906977 2.22209365 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 114 3.68e-28   NR MBU6367826.1 2026742 g46094 i0 93 0.697959183673469 57 4 69.8 0 245 75 294 350 MBU6367826.1 IS5 family transposase [Gemmatimonadota bacterium] diamond 171 114 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29735076 29735076 PRJNA703759_P_NODE_49710_length_243_cov_0.917647_g49234_i0 PRJNA703759 49710 243 0.917647 2.22988221 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 128 1.63e-33   NR MCI0434341.1 2026742 g49234 i0 72 2 82 21 98.8 1 242 3 133 214 MCI0434341.1 hypothetical protein [Gemmatimonadota bacterium] diamond 486 128 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30177499 30177499 PRJNA703759_P_NODE_17072_length_330_cov_2.190661_g16596_i0 PRJNA703759 17072 330 2.190661 7.2291813 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 108 1.22e-25   NR HEY0243888.1 2026741 g16596 i0 52.9 0.945454545454545 104 46 94.5 1 317 6 42 142 HEY0243888.1 MBL fold metallo-hydrolase [Gemmatimonadaceae bacterium] diamond 312 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30662654 30662654 PRJNA703759_P_NODE_41633_length_248_cov_0.891429_g41157_i0 PRJNA703759 41633 248 0.891429 2.21074392 Bacteria 2 Bacteria Bacteria 113 1.1e-27   NR MEX0892144.1 2026742 g41157 i0 70.9 5.84274193548387 79 23 95.6 0 6 242 128 206 MEX0892144.1 AAA family ATPase [Gemmatimonadota bacterium] diamond 1449 114 0.991228070175439 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30777959 30777959 PRJNA703759_P_NODE_36574_length_252_cov_0.871508_g36098_i0 PRJNA703759 36574 252 0.871508 2.19620016 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 76.3 4.96e-15   NR HET7470090.1 2448054 g36098 i0 53.6 1.64285714285714 69 32 82.1 0 2 208 108 176 HET7470090.1 DUF3341 domain-containing protein [Gemmatimonadales bacterium] diamond 414 76.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31283383 31283383 PRJNA703759_P_NODE_12555_length_379_cov_1.212418_g12079_i0 PRJNA703759 12555 379 1.212418 4.59506422 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 113 1.57e-29   NR HXY19345.1 2448054 g12079 i0 67.1 1.34564643799472 85 26 66.5 2 253 2 1 84 HXY19345.1 VOC family protein [Gemmatimonadales bacterium] diamond 510 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31315141 31315141 PRJNA703759_P_NODE_20655_length_306_cov_1.158798_g20179_i0 PRJNA703759 20655 306 1.158798 3.54592188 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 75.5 2.3e-14   NR MBY0488634.1 2026741 g20179 i0 76.1 0.450980392156863 46 11 45.1 0 138 1 1 46 MBY0488634.1 DUF1697 domain-containing protein [Gemmatimonadaceae bacterium] diamond 138 75.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31662913 31662913 PRJNA703759_P_NODE_9117_length_450_cov_2.639257_g8641_i0 PRJNA703759 9117 450 2.639257 11.8766565 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 48.9 0.00104   NR MCE2941074.1 2026742 g8641 i0 29.5 0.586666666666667 88 59 57.3 2 92 349 67 153 MCE2941074.1 hypothetical protein [Gemmatimonadota bacterium] diamond 264 48.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32042721 32042721 PRJNA703759_P_NODE_40958_length_249_cov_0.886364_g40482_i0 PRJNA703759 40958 249 0.886364 2.20704636 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 136 3.75e-36   NR MBY0488640.1 2026741 g40482 i0 90.2 0.987951807228916 82 8 98.8 0 2 247 157 238 MBY0488640.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 246 136 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32327875 32327875 PRJNA703759_P_NODE_43539_length_247_cov_0.896552_g43063_i0 PRJNA703759 43539 247 0.896552 2.21448344 Longimicrobium sp. 2029185 Bacteria Bacteria 131 3.47e-35   NR WP_329687970.1 2029185 g43063 i0 86.4 0.983805668016194 81 11 98.4 0 4 246 67 147 WP_329687970.1 hypothetical protein [Longimicrobium sp.] diamond 243 131 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32485845 32485845 PRJNA703759_P_NODE_35199_length_253_cov_0.866667_g34723_i0 PRJNA703759 35199 253 0.866667 2.19266751 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 147 6.17e-40   NR MBY0488480.1 2026741 g34723 i0 91.7 0.99604743083004 84 7 99.6 0 253 2 216 299 MBY0488480.1 ABC transporter ATP-binding protein [Gemmatimonadaceae bacterium] diamond 252 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32812006 32812006 PRJNA703759_P_NODE_13360_length_368_cov_1.057627_g12884_i0 PRJNA703759 13360 368 1.057627 3.89206736 Bacteria 2 Bacteria Bacteria 141 1.9699999999999998e-38   NR OPX31674.1 1956166 g12884 i0 58.8 3.77445652173913 114 47 92.9 0 368 27 154 267 OPX31674.1 MAG: hypothetical protein B1H09_02310 [Gemmatimonadaceae bacterium 4484_173] diamond 1389 141 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium 4484_173

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;