RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA703759" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA703759 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14713757 14713757 PRJNA703759_P_NODE_48632_length_243_cov_1.517647_g48156_i0 PRJNA703759 48632 243 1.517647 3.68788221 Cochliopodium plurinucleolum 1512277 Discosea other_Eukaryota 366 6.89e-97   NTclustered gi|659103930|gb|KJ569732.1| 1512277 g48156 i0 93.827 56.9958847736626 243 15 100 0 1 243 622 864 Cochliopodium plurinucleolum 18S ribosomal RNA gene, partial sequence blastn 13850 366 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium plurinucleolum
22361703 22361703 PRJNA703759_P_NODE_34658_length_253_cov_0.866667_g34182_i0 PRJNA703759 34658 253 0.866667 2.19266751 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 75 4.9e-9   NTclustered gi|470506140|ref|XM_004348660.1| 1257118 g34182 i0 95.652 0.565217391304348 46 2 18 0 207 252 673 628 Acanthamoeba castellanii str. Neff Guanine nucleotidebinding protein G(o), alpha subunit, putative (ACA1_035260), partial mRNA blastn 143 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27082808 27082808 PRJNA703759_P_NODE_37322_length_251_cov_0.876404_g36846_i0 PRJNA703759 37322 251 0.876404 2.19977404 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.6 7.17e-4   NR XP_004334493.1 1257118 g36846 i0 80 0.47808764940239 20 4 23.9 0 19 78 25 44 XP_004334493.1 uncharacterized protein ACA1_330540 [Acanthamoeba castellanii str. Neff] diamond 120 46.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29293282 29293282 PRJNA703759_P_NODE_15269_length_347_cov_0.967153_g14793_i0 PRJNA703759 15269 347 0.967153 3.35602091 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 3.21e-17   NR XP_004349684.1 1257118 g14793 i0 36.6 2.71469740634006 112 71 96.8 0 4 339 20 131 XP_004349684.1 uncharacterized protein ACA1_307930, partial [Acanthamoeba castellanii str. Neff] diamond 942 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29482524 29482524 PRJNA703759_P_NODE_33750_length_254_cov_2.353591_g33274_i0 PRJNA703759 33750 254 2.353591 5.97812114 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 79.3 1.77e-15   NR XP_004356560.1 1257118 g33274 i0 48.1 0.956692913385827 81 39 92.1 2 1 234 196 276 XP_004356560.1 nadph-dependent carbonyl reductase family protein [Acanthamoeba castellanii str. Neff] diamond 243 79.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;