RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA703759", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

  • Viridiplantae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29178286 29178286 PRJNA703759_P_NODE_23589_length_290_cov_2.539171_g23113_i0 PRJNA703759 23589 290 2.539171 7.3635959 root 1 Root_unresolved Root_unresolved 55.5 2.29e-6   NR KAJ9521041.1 44745 g23113 i0 38.1 9.98275862068965 84 50 84.8 1 5 250 1385 1468 KAJ9521041.1 hypothetical protein QJQ45_022761 [Haematococcus lacustris] diamond 2895 55.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
30051094 30051094 PRJNA703759_P_NODE_42111_length_248_cov_0.891429_g41635_i0 PRJNA703759 42111 248 0.891429 2.21074392 Micromonas commoda 296587 Plants Plants 101 7.48e-23   NR XP_002506649.1 296587 g41635 i0 51.9 2.93951612903226 81 39 98 0 247 5 689 769 XP_002506649.1 predicted protein [Micromonas commoda] diamond 729 101 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
30240805 30240805 PRJNA703759_P_NODE_11212_length_402_cov_4.127660_g10736_i0 PRJNA703759 11212 402 4.12766 16.5931932 [Myrmecia] bisecta 41462 Plants Plants 86.3 1.15e-16   NR KAK9814254.1 41462 g10736 i0 37.1 0.985074626865672 132 77 97.8 3 4 396 235 361 KAK9814254.1 hypothetical protein WJX72_003006 [[Myrmecia] bisecta] diamond 396 86.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;