RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA703759", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 1 ✖

tax_kingdom 1

  • Methanobacteriati · 1 ✖

bioproject 1

  • PRJNA703759 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24910694 24910694 PRJNA703759_P_NODE_29700_length_268_cov_1.225641_g29224_i0 PRJNA703759 29700 268 1.225641 3.28471788 uncultured Methanomassiliicoccales archaeon 1235852 Archaea Archaea 52.8 0.025   NTclustered gi|2874253643|emb|OY968769.1| 1235852 g29224 i0 100 0.104477611940299 28 0 10 0 211 238 2523827 2523800 MAG: uncultured Methanomassiliicoccales archaeon isolate MFD00905.bin.2.112 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     uncultured Methanomassiliicoccales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;