RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA703759", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA703759 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28693627 28693627 PRJNA703759_P_NODE_41787_length_248_cov_0.891429_g41311_i0 PRJNA703759 41787 248 0.891429 2.21074392 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 88.6 1.81e-18   NR CEP01544.1 37360 g41311 i0 46.9 0.979838709677419 81 42 96.8 1 244 5 172 252 CEP01544.1 hypothetical protein PBRA_002150 [Plasmodiophora brassicae] diamond 243 88.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32874953 32874953 PRJNA703759_P_NODE_38720_length_250_cov_0.881356_g38244_i0 PRJNA703759 38720 250 0.881356 2.20339 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 51.2 2.54e-5   NR CEO97312.1 37360 g38244 i0 43.9 4.824 66 35 79.2 1 32 229 119 182 CEO97312.1 hypothetical protein PBRA_000657 [Plasmodiophora brassicae] diamond 1206 51.6 0.992248062015504 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;