RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA703759", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10888831 10888831 PRJNA703759_P_NODE_46289_length_245_cov_0.906977_g45813_i0 PRJNA703759 46289 245 0.906977 2.22209365 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 115 1.35e-27   NR KAL3816638.1 382380 g45813 i0 74.1 2.00816326530612 81 21 99.2 0 243 1 1487 1567 KAL3816638.1 hypothetical protein ACHAXA_000816 [Cyclostephanos tholiformis] diamond 492 115 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclostephanos Cyclostephanos tholiformis
27114244 27114244 PRJNA703759_P_NODE_45582_length_245_cov_1.674419_g45106_i0 PRJNA703759 45582 245 1.674419 4.10232655 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00428   NR GFH60663.1 426638 g45106 i0 44.7 0.575510204081633 47 26 57.6 0 143 3 629 675 GFH60663.1 hypothetical protein CTEN210_17139 [Chaetoceros tenuissimus] diamond 141 45.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
29261548 29261548 PRJNA703759_P_NODE_37549_length_251_cov_0.876404_g37073_i0 PRJNA703759 37549 251 0.876404 2.19977404 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 47.8 4.02e-4   NR EJK57021.1 159749 g37073 i0 40.8 1.13545816733068 49 29 58.6 0 1 147 55 103 EJK57021.1 hypothetical protein THAOC_22982 [Thalassiosira oceanica] diamond 285 47.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;