RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA703759", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27588441 27588441 PRJNA703759_P_NODE_46444_length_245_cov_0.906977_g45968_i0 PRJNA703759 46444 245 0.906977 2.22209365 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 124 1.18e-32   NR MCK4781677.1 2762014 g45968 i0 70.9 1.92244897959184 79 22 95.5 1 2 235 210 288 MCK4781677.1 methyltransferase domain-containing protein [Candidatus Parcubacteria bacterium] diamond 471 124 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29893431 29893431 PRJNA703759_P_NODE_23031_length_293_cov_1.245455_g22555_i0 PRJNA703759 23031 293 1.245455 3.64918315 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 105 3.67e-25   NR MFM2330970.1 2762014 g22555 i0 53.3 0.9419795221843 92 43 94.2 0 293 18 163 254 MFM2330970.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 276 105 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32169516 32169516 PRJNA703759_P_NODE_48638_length_243_cov_1.500000_g48162_i0 PRJNA703759 48638 243 1.5 3.645 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 82.4 4.04e-16   NR MEN9621802.1 2762014 g48162 i0 68.3 1.48148148148148 60 19 74.1 0 180 1 6 65 MEN9621802.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 360 82.4 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;