RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA703759", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA703759 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22862293 22862293 PRJNA703759_P_NODE_21118_length_303_cov_1.513043_g20642_i0 PRJNA703759 21118 303 1.513043 4.58452029 Entamoeba 5758 Evosea other_Eukaryota 86.1 2.78e-12   NTclustered gi|83843290|tpg|BK005670.1| 5759 g20642 i0 94.545 15.8778877887789 55 3 18 0 138 192 62 8 TPA_exp: Entamoeba histolytica tRNA-encoding array unit TX blastn 4811 86.1 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
25411505 25411505 PRJNA703759_P_NODE_42900_length_247_cov_0.896552_g42424_i0 PRJNA703759 42900 247 0.896552 2.21448344 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.022   NTclustered gi|66823900|ref|XM_640213.1| 352472 g42424 i0 96.875 12.3400809716599 32 0 13 1 40 71 1566 1536 Dictyostelium discoideum AX4 aspartyl-tRNA synthetase (aspS2) mRNA, complete cds blastn 3048 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
26639657 26639657 PRJNA703759_P_NODE_52101_length_232_cov_4.364780_g51625_i0 PRJNA703759 52101 232 4.36478 10.1262896 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 44.7 0.0068   NR PRP77652.1 1890364 g51625 i0 47.5 0.517241379310345 40 17 51.7 1 111 230 618 653 PRP77652.1 RhoGAP domain-containing protein [Planoprotostelium fungivorum] diamond 120 44.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
26861677 26861677 PRJNA703759_P_NODE_46681_length_245_cov_0.906977_g46205_i0 PRJNA703759 46681 245 0.906977 2.22209365 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 64.3 9.5e-10   NR KYQ96803.1 361077 g46205 i0 49.1 0.697959183673469 57 29 69.8 0 185 15 266 322 KYQ96803.1 Hsp70 subfamily B suppressor 1 [Tieghemostelium lacteum] diamond 171 64.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;