RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA702290", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA702290 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8837536 8837536 PRJNA702290_P_NODE_1487_length_160_cov_22.429752_g1479_i0 PRJNA702290 1487 160 22.429752 35.8876032 Desulfobulbus 893 Bacteria Bacteria 95.3 2.17e-15   NTclustered gi|470487339|ref|NR_076814.1| 894 g1479 i0 100 125.8375 51 0 32 0 80 130 223 173 Desulfobulbus propionicus strain 1pr3 23S ribosomal RNA gene, complete sequence blastn 20134 95.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus propionicus
28609841 28609841 PRJNA702290_P_NODE_2007_length_153_cov_27.815789_g1999_i0 PRJNA702290 2007 153 27.815789 42.55815717 Pseudomonadati 3379134 Bacteria Bacteria 60.1 7.98e-9   NR OIO03162.1 1805130 g1999 i0 70 3.58823529411765 40 12 78.4 0 128 9 106 145 OIO03162.1 MAG: capsid protein [Desulfovibrionaceae bacterium CG1_02_65_16] diamond 549 60.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium CG1_02_65_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;