RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA702290" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA702290 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2459855 2459855 PRJNA702290_P_NODE_622_length_191_cov_19.671053_g614_i0 PRJNA702290 622 191 19.671053 37.57171123 Myxococcaceae 31 Bacteria Bacteria 141 3.41e-29   NTclustered gi|2869653495|gb|CP175551.1| 33 g614 i0 100 163.157068062827 76 0 80 0 111 186 3205 3280 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 31163 141 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
5787306 5787306 PRJNA702290_P_NODE_885_length_191_cov_10.901316_g877_i0 PRJNA702290 885 191 10.901316 20.82151356 Labilithrix luteola 1391654 Bacteria Bacteria 132 2.05e-26   NTclustered gi|913610804|gb|CP012333.1| 1391654 g877 i0 98.649 61.9581151832461 74 1 79 0 112 185 3944110 3944037 Labilithrix luteola strain DSM 27648, complete genome blastn 11834 132 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
17762443 17762443 PRJNA702290_P_NODE_1094_length_191_cov_5.953947_g1086_i0 PRJNA702290 1094 191 5.953947 11.37203877 Pseudomonadati 3379134 Bacteria Bacteria 139 1.23e-28   NTclustered gi|5701939|emb|AJ233935.1| 41 g1086 i0 100 41.1989528795811 75 0 39 0 5 79 330 256 Stigmatella aurantiaca 16S rRNA gene, strain Sg a1 blastn 7869 139 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;