RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA702290" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA702290 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3234772 3234772 PRJNA702290_P_NODE_363_length_235_cov_8.086735_g355_i0 PRJNA702290 363 235 8.086735 19.00382725 Blidingia sp. DT1 2022611 Plants Plants 200 7.11e-47   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g355 i0 94.03 49.9574468085106 134 5 57 3 7 139 3072 2941 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 11740 200 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1
12664133 12664133 PRJNA702290_P_NODE_1150_length_191_cov_4.394737_g1142_i0 PRJNA702290 1150 191 4.394737 8.39394767 Eukaryota 2759 Plants Plants 143 9.479999999999999e-30   NTclustered gi|63029886|gb|DQ009743.1| 3156 g1142 i0 100 66.1675392670157 77 0 40 0 4 80 1587 1511 Asteromonas gracilis strain CCMP 140 18S ribosomal RNA gene, partial sequence blastn 12638 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Asteromonadaceae Asteromonas Asteromonas gracilis
20311001 20311001 PRJNA702290_P_NODE_1116_length_191_cov_5.125000_g1108_i0 PRJNA702290 1116 191 5.125 9.78875 Trebouxia 13786 Plants Plants 117 5.74e-22   NTclustered gi|49781197|gb|AY648107.1| 283661 g1108 i0 94.667 13.5287958115183 75 4 39 0 6 80 1671 1597 Trebouxia sp. Wei 22-c 26S ribosomal RNA gene, partial sequence blastn 2584 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Wei 22-c
24910094 24910094 PRJNA702290_P_NODE_700_length_191_cov_15.763158_g692_i0 PRJNA702290 700 191 15.763158 30.10763178 Tetraselmis marina 41888 Plants Plants 137 4.41e-28   NTclustered gi|2289397876|ref|NC_065695.1| 41888 g692 i0 97.5 44.2146596858639 80 2 42 0 112 191 77744 77823 Tetraselmis marina chloroplast, complete genome blastn 8445 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis marina
28199145 28199145 PRJNA702290_P_NODE_1746_length_157_cov_25.525424_g1738_i0 PRJNA702290 1746 157 25.525424 40.07491568 root 1 Root_unresolved Root_unresolved 47.8 1.09e-4   NR AGH30308.1 31302 g1738 i0 62.1 1.98726114649682 29 11 55.4 0 93 7 50 78 AGH30308.1 chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Chromochloris zofingiensis] diamond 312 47.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Chromochloridaceae Chromochloris Chromochloris zofingiensis
30208881 30208881 PRJNA702290_P_NODE_592_length_191_cov_23.072368_g584_i0 PRJNA702290 592 191 23.072368 44.06822288 Haematococcus lacustris 44745 Plants Plants 49.3 9.2e-5   NR KAJ9515890.1 44745 g584 i0 88 0.392670157068063 25 3 39.3 0 114 188 293 317 KAJ9515890.1 hypothetical protein QJQ45_016928 [Haematococcus lacustris] diamond 75 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
32011057 32011057 PRJNA702290_P_NODE_1838_length_156_cov_18.128205_g1830_i0 PRJNA702290 1838 156 18.128205 28.2799998 Bryopsis sp. KO-2 3115439 Plants Plants 46.2 3.13e-4   NR GMH38648.1 3041901 g1830 i0 50 1.55769230769231 52 23 94.2 2 7 153 33 84 GMH38648.1 hypothetical protein BSKO_06532 [Bryopsis sp. KO-2023] diamond 243 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;