RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA702290" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA702290 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15213229 15213229 PRJNA702290_P_NODE_912_length_191_cov_10.322368_g904_i0 PRJNA702290 912 191 10.322368 19.71572288 Planctomycetia 203683 Bacteria Bacteria 84.2 5.83e-12   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g904 i0 85.897 52.3926701570681 78 11 41 0 113 190 122547 122624 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 10007 84.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
29640264 29640264 PRJNA702290_P_NODE_1130_length_191_cov_4.789474_g1122_i0 PRJNA702290 1130 191 4.789474 9.14789534 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 57.8 8.93e-8   NR RYD79216.1 2026800 g1122 i0 100 0.392670157068063 25 0 39.3 0 188 114 328 352 RYD79216.1 MAG: ATP-binding cassette domain-containing protein, partial [Verrucomicrobiaceae bacterium] diamond 75 57.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30399225 30399225 PRJNA702290_P_NODE_593_length_191_cov_22.967105_g585_i0 PRJNA702290 593 191 22.967105 43.86717055 Opitutaceae bacterium 2006848 Bacteria Bacteria 52.4 7.36e-6   NR MBL9200456.1 2006848 g585 i0 96 0.392670157068063 25 1 39.3 0 76 2 203 227 MBL9200456.1 hypothetical protein [Opitutaceae bacterium] diamond 75 52.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30430712 30430712 PRJNA702290_P_NODE_2153_length_150_cov_7.567568_g2145_i0 PRJNA702290 2153 150 7.567568 11.351352 Fimbriiglobus sp. 1914235 Bacteria Bacteria 46.6 1.27e-4   NR MCU0705257.1 1914235 g2145 i0 86.4 0.44 22 3 44 0 4 69 21 42 MCU0705257.1 hypothetical protein [Fimbriiglobus sp.] diamond 66 46.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Fimbriiglobus Fimbriiglobus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;