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contig_metadata

21 rows where bioproject = "PRJNA702290" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 21 ✖

bioproject 1

  • PRJNA702290 · 21 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5787281 5787281 PRJNA702290_P_NODE_1545_length_159_cov_15.200000_g1537_i0 PRJNA702290 1545 159 15.2 24.168 Ipomoea nil 35883 Plants Plants 128 2.13e-25   NTclustered gi|1109193309|ref|XM_019322592.1| 35883 g1537 i0 82.249 68.3018867924528 169 11 95 5 3 153 168 335 PREDICTED: Ipomoea nil 60S ribosomal protein L12-like (LOC109173353), mRNA blastn 10860 128 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Convolvulaceae Ipomoea Ipomoea nil
5787295 5787295 PRJNA702290_P_NODE_285_length_279_cov_198.587500_g277_i0 PRJNA702290 285 279 198.5875 554.059125 Bupleurum falcatum 46367 Plants Plants 496 9.88e-136   NTclustered gi|2571153582|gb|OR493979.1| 46367 g277 i0 98.921 97.0143369175627 278 2 99 1 2 278 5416 5693 Bupleurum falcatum voucher 2009100601 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27067 496 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Bupleurum Bupleurum falcatum
6288708 6288708 PRJNA702290_P_NODE_865_length_191_cov_11.434211_g857_i0 PRJNA702290 865 191 11.434211 21.83934301 Glycine 3846 Plants Plants 73.1 1.26e-8   NTclustered gi|210143208|dbj|AK285990.1| 3847 g857 i0 89.474 11.6020942408377 57 6 30 0 121 177 288 232 Glycine max cDNA, clone: GMFL01-19-P06 blastn 2216 73.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
7562549 7562549 PRJNA702290_P_NODE_426_length_217_cov_3.629213_g418_i0 PRJNA702290 426 217 3.629213 7.87539221 Magnoliopsida 3398 Plants Plants 379 7.739999999999998e-101   NTclustered gi|377819357|ref|NC_016753.1| 4460 g418 i0 99.519 186.912442396313 208 1 96 0 4 211 111339 111132 Colocasia esculenta chloroplast, complete genome blastn 40560 379 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Alismatales Araceae Colocasia Colocasia esculenta
8336925 8336925 PRJNA702290_P_NODE_1147_length_191_cov_4.467105_g1139_i0 PRJNA702290 1147 191 4.467105 8.53217055 Cornus florida 4283 Plants Plants 58.4 3.53e-4   NTclustered gi|2583722524|ref|XR_009470331.1| 4283 g1139 i0 94.737 0.198952879581152 38 1 20 1 140 177 109 73 PREDICTED: Cornus florida uncharacterized LOC132274092 (LOC132274092), ncRNA blastn 38 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cornales Cornaceae Cornus Cornus florida
8837554 8837554 PRJNA702290_P_NODE_47_length_515_cov_3.915966_g40_i0 PRJNA702290 47 515 3.915966 20.1672249 Araceae 4454 Plants Plants 918 0   NTclustered gi|161784171|ref|NC_010109.1| 4472 g40 i0 98.835 197.003883495146 515 6 100 0 1 515 111109 110595 Lemna minor chloroplast, complete genome blastn 101457 924 0.993506493506494 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Alismatales Araceae Lemna Lemna minor
10113262 10113262 PRJNA702290_P_NODE_2048_length_152_cov_22.371681_g2040_i0 PRJNA702290 2048 152 22.371681 34.00495512 Magnoliopsida 3398 Plants Plants 267 4.08e-67   NTclustered gi|1952043583|gb|MN428574.1| 4355 g2040 i0 99.32 96.7105263157895 147 1 97 0 6 152 2351 2497 Darlingtonia californica isolate DCAL01 26S ribosomal RNA gene, partial sequence blastn 14700 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Sarraceniaceae Darlingtonia Darlingtonia californica
10887850 10887850 PRJNA702290_P_NODE_1449_length_164_cov_1.224000_g1441_i0 PRJNA702290 1449 164 1.224 2.00736 Lemna minuta 161101 Plants Plants 300 4.43e-77   NTclustered gi|2859900956|emb|OZ204802.1| 161101 g1441 i0 100 98.7560975609756 162 0 99 0 3 164 114665 114826 Lemna minuta genome assembly, organelle: plastid:chloroplast blastn 16196 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Alismatales Araceae Lemna Lemna minuta
12664146 12664146 PRJNA702290_P_NODE_270_length_285_cov_6.345528_g262_i0 PRJNA702290 270 285 6.345528 18.0847548 Magnoliopsida 3398 Plants Plants 505 1.6799999999999995e-138   NTclustered gi|161784171|ref|NC_010109.1| 4472 g262 i0 99.286 192.575438596491 280 1 98 1 3 282 111176 111454 Lemna minor chloroplast, complete genome blastn 54884 510 0.990196078431373 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Alismatales Araceae Lemna Lemna minor
13938581 13938581 PRJNA702290_P_NODE_331_length_250_cov_3.872038_g323_i0 PRJNA702290 331 250 3.872038 9.680095 Magnoliopsida 3398 Plants Plants 442 1.1499999999999994e-119   NTclustered gi|156598340|gb|EU017008.1| 4641 g323 i0 100 185.464 239 0 96 0 8 246 2286 2524 Musa acuminata 23S ribosomal RNA (rrn23) gene, partial sequence; chloroplast blastn 46366 442 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
15213208 15213208 PRJNA702290_P_NODE_1232_length_191_cov_2.486842_g1224_i0 PRJNA702290 1232 191 2.486842 4.74986822 Eukaryota 2759 Plants Plants 141 3.41e-29   NTclustered gi|2029522069|ref|XR_005924068.1| 3635 g1224 i0 98.734 701.732984293194 79 1 41 0 113 191 961 1039 PREDICTED: Gossypium hirsutum 18S ribosomal RNA (LOC121226206), rRNA blastn 134031 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum
15986371 15986371 PRJNA702290_P_NODE_1753_length_157_cov_21.915254_g1745_i0 PRJNA702290 1753 157 21.915254 34.40694878 Oryza sativa 4530 Plants Plants 259 7.11e-65   NTclustered gi|37989591|dbj|AK119968.1| 39947 g1745 i0 98.63 22 146 2 93 0 3 148 179 324 Oryza sativa Japonica Group cDNA clone:002-184-D12, full insert sequence blastn 3454 259 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
16487602 16487602 PRJNA702290_P_NODE_1693_length_158_cov_8.840336_g1685_i0 PRJNA702290 1693 158 8.840336 13.96773088 Lauraceae 3433 Plants Plants 263 5.54e-66   NTclustered gi|2249528587|gb|ON685408.1| 119261 g1685 i0 98.039 102.778481012658 153 0 95 2 3 152 2338 2186 Cinnamomum burmanni isolate BPTPS094 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16239 263 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Cinnamomum Cinnamomum burmanni
16487603 16487603 PRJNA702290_P_NODE_1733_length_158_cov_1.252101_g1725_i0 PRJNA702290 1733 158 1.252101 1.97831958 Magnoliopsida 3398 Plants Plants 279 5.500000000000001e-71   NTclustered gi|1158586937|gb|KY084475.1| 3483 g1725 i0 99.351 192.063291139241 154 1 97 0 4 157 104583 104430 Cannabis sativa chloroplast, complete genome blastn 30346 281 0.99288256227758 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
19036399 19036399 PRJNA702290_P_NODE_1135_length_191_cov_4.730263_g1127_i0 PRJNA702290 1135 191 4.730263 9.03480233 Pinopsida 58019 Plants Plants 143 9.479999999999999e-30   NTclustered gi|2571304680|ref|XR_009364031.1| 3369 g1127 i0 98.75 80.8952879581152 80 1 81 0 1 80 352 273 PREDICTED: Cryptomeria japonica 28S ribosomal RNA (LOC131865303), rRNA blastn 15451 143 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
19810693 19810693 PRJNA702290_P_NODE_656_length_191_cov_18.026316_g648_i0 PRJNA702290 656 191 18.026316 34.43026356 Urtica morifolia 1435590 Plants Plants 141 3.41e-29   NTclustered gi|2254130385|gb|OM892805.1| 1435590 g648 i0 98.734 42.9738219895288 79 1 41 0 112 190 4309 4231 Urtica morifolia isolate U200 18S small subunit ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S large subunit ribosomal RNA gene, complete sequence blastn 8208 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Urticaceae Urtica Urtica morifolia
19810699 19810699 PRJNA702290_P_NODE_956_length_191_cov_9.223684_g948_i0 PRJNA702290 956 191 9.223684 17.61723644 Solanum stenotomum 172797 Plants Plants 139 1.23e-28   NTclustered gi|2276444676|ref|XM_049541914.1| 172797 g948 i0 100 8.49738219895288 75 0 81 0 6 80 1035 961 PREDICTED: Solanum stenotomum CSC1-like protein RXW8 (LOC125861973), transcript variant X1, mRNA blastn 1623 139 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum stenotomum
21586883 21586883 PRJNA702290_P_NODE_1117_length_191_cov_5.118421_g1109_i0 PRJNA702290 1117 191 5.118421 9.77618411 Magnoliopsida 3398 Plants Plants 145 2.63e-30   NTclustered gi|1516510546|emb|LR031570.1| 3711 g1109 i0 100 99.6858638743455 78 0 41 0 113 190 4078572 4078649 Brassica rapa genome, scaffold: A05 blastn 19040 145 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
21586908 21586908 PRJNA702290_P_NODE_917_length_191_cov_10.243421_g909_i0 PRJNA702290 917 191 10.243421 19.56493411 Magnoliopsida 3398 Plants Plants 145 2.63e-30   NTclustered gi|1381390543|ref|NC_037463.1| 2711 g909 i0 100 74.6020942408377 78 0 80 0 4 81 348949 349026 Citrus sinensis mitochondrion, complete genome blastn 14249 145 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
24136375 24136375 PRJNA702290_P_NODE_1019_length_191_cov_7.934211_g1011_i0 PRJNA702290 1019 191 7.934211 15.15434301 Ericaceae 4345 Plants Plants 137 4.41e-28   NTclustered gi|2739979358|emb|OZ071053.1| 13385 g1011 i0 100 82.8062827225131 74 0 80 0 7 80 201724 201651 Calluna vulgaris genome assembly, organelle: mitochondrion blastn 15816 137 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris
25411165 25411165 PRJNA702290_P_NODE_1300_length_189_cov_7.526667_g1292_i0 PRJNA702290 1300 189 7.526667 14.22540063 root 1 Root_unresolved Root_unresolved 335 1.4399999999999993e-87   NTclustered gi|161784171|ref|NC_010109.1| 4472 g1292 i0 100 185.280423280423 181 0 96 0 4 184 107404 107224 Lemna minor chloroplast, complete genome blastn 35018 335 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Alismatales Araceae Lemna Lemna minor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;