RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA700095" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA700095 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5786622 5786622 PRJNA700095_P_NODE_23065_length_361_cov_2.319444_g21801_i0 PRJNA700095 23065 361 2.319444 8.37319284 Spiroplasma corruscae 216934 Bacteria Bacteria 52.8 0.034   NTclustered gi|1226105578|gb|CP022535.1| 216934 g21801 i0 100 0.0775623268698061 28 0 8 0 259 286 663465 663438 Spiroplasma corruscae strain EC-1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma corruscae
13436845 13436845 PRJNA700095_P_NODE_11071_length_580_cov_2.112426_g9830_i0 PRJNA700095 11071 580 2.112426 12.2520708 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 Bacteria Bacteria 204 1.4899999999999999e-47   NTclustered gi|971185387|gb|CP013128.1| 1749074 g9830 i0 81.818 41.6741379310345 242 44 42 0 15 256 412988 412747 Mycoplasma sp. (ex Biomphalaria glabrata) isolate Barreiro1 chromosome, complete genome blastn 24171 204 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. (ex Biomphalaria glabrata)
22861655 22861655 PRJNA700095_P_NODE_21038_length_383_cov_1.393548_g19774_i0 PRJNA700095 21038 383 1.393548 5.33728884 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 91.7 3.57e-21   NR NMA06015.1 1898209 g19774 i0 67.2 3.07832898172324 61 20 47.8 0 184 2 10 70 NMA06015.1 thioredoxin [Acholeplasmataceae bacterium] diamond 1179 91.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
27820615 27820615 PRJNA700095_P_NODE_56884_length_247_cov_0.879310_g55620_i0 PRJNA700095 56884 247 0.87931 2.1718957 root 1 Root_unresolved Root_unresolved 112 2.25e-27   NR WP_026389368.1 264638 g55620 i0 64.2 9.43724696356275 81 29 98.4 0 243 1 132 212 WP_026389368.1 agmatine deiminase [[Acholeplasma] multilocale] diamond 2331 113 0.991150442477876 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Entomoplasma [Acholeplasma] multilocale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;