RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA700095", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA700095 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8336498 8336498 PRJNA700095_P_NODE_59727_length_245_cov_0.889535_g58463_i0 PRJNA700095 59727 245 0.889535 2.17936075 Borrelia puertoricensis 2756107 Bacteria Bacteria 54.7 0.006   NTclustered gi|2225483732|gb|CP075391.1| 2756107 g58463 i0 100 0.118367346938776 29 0 12 0 205 233 11002 11030 Borrelia puertoricensis strain SUM plasmid lp110, complete sequence blastn 29 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia puertoricensis
9611675 9611675 PRJNA700095_P_NODE_36888_length_284_cov_1.274882_g35624_i0 PRJNA700095 36888 284 1.274882 3.62066488 Treponema putidum 221027 Bacteria Bacteria 254 6.7e-63   NTclustered gi|2277015157|gb|CP038803.1| 221027 g35624 i0 83.696 2.91197183098592 276 37 96 6 13 284 2349029 2349300 Treponema putidum strain OMZ 846 chromosome, complete genome blastn 827 254 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema putidum
10887247 10887247 PRJNA700095_P_NODE_36629_length_284_cov_4.943128_g35365_i0 PRJNA700095 36629 284 4.943128 14.03848352 Leptospira sp. GIMC2001 1513297 Bacteria Bacteria 58.4 5.64e-4   NTclustered gi|2440388381|gb|CP115468.1| 1513297 g35365 i0 100 0.408450704225352 31 0 11 0 1 31 2313078 2313108 Leptospira sp. GIMC2001 chromosome 1, complete sequence blastn 116 58.4 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp. GIMC2001
26797882 26797882 PRJNA700095_P_NODE_11021_length_581_cov_5.614173_g9780_i0 PRJNA700095 11021 581 5.614173 32.61834513 Leptospira ognonensis 2484945 Bacteria Bacteria 215 2.3899999999999998e-68   NR WP_342776194.1 2484945 g9780 i0 72.1 3.8209982788296 147 34 72.3 1 420 1 4 150 WP_342776194.1 VOC family protein [Leptospira ognonensis] diamond 2220 215 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira ognonensis
28061791 28061791 PRJNA700095_P_NODE_29065_length_315_cov_2.314050_g27801_i0 PRJNA700095 29065 315 2.31405 7.2892575 Spirochaetota bacterium 2202144 Bacteria Bacteria 43.5 0.0462   NR HNW28605.1 2202144 g27801 i0 26.9 0.885714285714286 93 66 88.6 1 7 285 486 576 HNW28605.1 hypothetical protein [Spirochaetota bacterium] diamond 279 43.5 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28472478 28472478 PRJNA700095_P_NODE_9186_length_647_cov_2.621951_g7978_i0 PRJNA700095 9186 647 2.621951 16.96402297 Candidatus Gallitreponema excrementavium 2840840 Bacteria Bacteria 51.2 0.00137   NR MBO8457157.1 2840840 g7978 i0 56.4 0.338485316846986 39 17 18.1 0 3 119 356 394 MBO8457157.1 caspase family protein [Candidatus Gallitreponema excrementavium] diamond 219 51.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales   Candidatus Gallitreponema Candidatus Gallitreponema excrementavium
30156885 30156885 PRJNA700095_P_NODE_36432_length_285_cov_1.448113_g35168_i0 PRJNA700095 36432 285 1.448113 4.12712205 Pseudomonadati 3379134 Bacteria Bacteria 63.9 3.91e-10   NR MBQ9539769.1 166 g35168 i0 47.1 4.50526315789474 68 36 71.6 0 4 207 61 128 MBQ9539769.1 glycosyltransferase family 61 protein [Treponema sp.] diamond 1284 64.3 0.993779160186625 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
31283355 31283355 PRJNA700095_P_NODE_64715_length_241_cov_2.488095_g63451_i0 PRJNA700095 64715 241 2.488095 5.99630895 Treponema sp. 166 Bacteria Bacteria 53.1 7.81e-6   NR MCR5400131.1 166 g63451 i0 75.8 0.410788381742739 33 8 41.1 0 240 142 551 583 MCR5400131.1 membrane protein insertase YidC [Treponema sp.] diamond 99 53.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;