RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA700095", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA700095 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30145635 30145635 PRJNA700095_P_NODE_60572_length_244_cov_1.350877_g59308_i0 PRJNA700095 60572 244 1.350877 3.29613988 Coelomomyces lativittatus 945690 Fungi Fungi 60.1 2.84e-8   NR KAJ1512743.1 945690 g59308 i0 38 0.971311475409836 79 47 97.1 1 239 3 311 387 KAJ1512743.1 Pre-mRNA-splicing factor SYF1 [Coelomomyces lativittatus] diamond 237 60.1 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus
30441609 30441609 PRJNA700095_P_NODE_43913_length_266_cov_1.595855_g42649_i0 PRJNA700095 43913 266 1.595855 4.2449743 root 1 Root_unresolved Root_unresolved 72.8 1.29e-12   NR KNE56242.1 578462 g42649 i0 45.8 2.9887218045112798 72 31 81.2 1 2 217 105 168 KNE56242.1 hypothetical protein AMAG_02075 [Allomyces macrogynus ATCC 38327] diamond 795 72.8 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
31863815 31863815 PRJNA700095_P_NODE_65397_length_241_cov_0.916667_g64133_i0 PRJNA700095 65397 241 0.916667 2.20916747 Eukaryota 2759 Fungi Fungi 132 1.09e-33   NR KAJ3362316.1 64504 g64133 i0 74.4 15.4979253112033 78 20 97.1 0 8 241 1121 1198 KAJ3362316.1 DEAH-box ATP-dependent RNA helicase prp22 [Allomyces arbusculus] diamond 3735 133 0.992481203007519 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces arbusculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;