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contig_metadata

24 rows where bioproject = "PRJNA700095", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 24 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 24 ✖

bioproject 1

  • PRJNA700095 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5786717 5786717 PRJNA700095_P_NODE_39145_length_278_cov_1.453659_g37881_i0 PRJNA700095 39145 278 1.453659 4.04117202 Nematoda environmental sample 554024 Nematoda Nematoda 472 1.6599999999999998e-128   NTclustered gi|2743156117|gb|PP910122.1| 554024 g37881 i0 97.802 66.158273381295 273 6 98 0 6 278 580 308 Nematoda environmental sample isolate SN_I large subunit ribosomal RNA gene, partial sequence blastn 18392 472 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
10887184 10887184 PRJNA700095_P_NODE_20609_length_388_cov_1.587302_g19346_i0 PRJNA700095 20609 388 1.587302 6.15873176 Strongyloides ratti 34506 Nematoda Nematoda 363 1.51e-95   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g19346 i0 84.658 94.5309278350515 365 54 94 2 25 388 1316 953 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 36678 363 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
12663766 12663766 PRJNA700095_P_NODE_64730_length_241_cov_2.339286_g63466_i0 PRJNA700095 64730 241 2.339286 5.63767926 Metazoa 33208 Nematoda Nematoda 73.1 1.67e-8   NTclustered gi|256251567|emb|FM207826.1| 6313 g63466 i0 80.645 0.771784232365145 93 18 39 0 148 240 434 342 Angiostrongylus cantonensis partial mRNA ORF1 for Putative protein, clone 00012D12 blastn 186 73.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
15985968 15985968 PRJNA700095_P_NODE_70973_length_200_cov_5.874016_g69708_i0 PRJNA700095 70973 200 5.874016 11.748032 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.017   NTclustered gi|690020769|emb|LM528349.1| 174720 g69708 i0 100 0.14 28 0 14 0 12 39 805 832 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0002678 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
19810052 19810052 PRJNA700095_P_NODE_24976_length_344_cov_1.701107_g23712_i0 PRJNA700095 24976 344 1.701107 5.85180808 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.033   NTclustered gi|413006602|emb|Z83230.2| 6239 g23712 i0 100 0.162790697674419 28 0 8 0 87 114 2024 1997 Caenorhabditis elegans Cosmid F56A8, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26619103 26619103 PRJNA700095_P_NODE_51021_length_251_cov_1.719101_g49757_i0 PRJNA700095 51021 251 1.719101 4.31494351 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.1 1.66e-6   NR VDM66424.1 40348 g49757 i0 60.4 10.0996015936255 48 18 57.4 1 107 250 6 52 VDM66424.1 unnamed protein product, partial [Strongylus vulgaris] diamond 2535 55.5 0.992792792792793 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
26650575 26650575 PRJNA700095_P_NODE_23741_length_355_cov_1.354610_g22477_i0 PRJNA700095 23741 355 1.35461 4.8088655 Rhabditida 6236 Nematoda Nematoda 142 2.17e-36   NR VDK44839.1 6269 g22477 i0 54.2 4.98591549295775 118 53 99.7 1 2 355 306 422 VDK44839.1 unnamed protein product [Anisakis simplex] diamond 1770 142 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
26766270 26766270 PRJNA700095_P_NODE_31781_length_303_cov_1.978261_g30517_i0 PRJNA700095 31781 303 1.978261 5.99413083 Cylicocyclus nassatus 53992 Nematoda Nematoda 49.7 2.81e-4   NR CAJ0593761.1 53992 g30517 i0 40.3 4.23762376237624 62 36 60.4 1 112 294 60 121 CAJ0593761.1 unnamed protein product [Cylicocyclus nassatus] diamond 1284 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
26872762 26872762 PRJNA700095_P_NODE_12161_length_548_cov_2.176842_g10911_i0 PRJNA700095 12161 548 2.176842 11.92909416 Metazoa 33208 Nematoda Nematoda 154 1.7e-39   NR CAJ0573087.1 96644 g10911 i0 45.6 16.0127737226277 182 88 99.6 5 3 548 901 1071 CAJ0573087.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 8775 155 0.993548387096774 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
27872419 27872419 PRJNA700095_P_NODE_5225_length_864_cov_3.318584_g4227_i0 PRJNA700095 5225 864 3.318584 28.67256576 Mesorhabditis spiculigera 96644 Nematoda Nematoda 221 1.85e-61   NR CAJ0585849.1 96644 g4227 i0 41.1 8.32986111111111 265 127 91.7 4 857 66 1218 1454 CAJ0585849.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 7197 221 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
28041550 28041550 PRJNA700095_P_NODE_63385_length_242_cov_1.786982_g62121_i0 PRJNA700095 63385 242 1.786982 4.32449644 root 1 Root_unresolved Root_unresolved 76.6 3.64e-14   NR KAI3410969.1 36090 g62121 i0 55 4.97107438016529 60 27 74.4 0 181 2 8 67 KAI3410969.1 hypothetical protein GPALN_003053 [Globodera pallida] diamond 1203 76.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
28282664 28282664 PRJNA700095_P_NODE_28966_length_316_cov_1.263374_g27702_i0 PRJNA700095 28966 316 1.263374 3.99226184 Necator americanus 51031 Nematoda Nematoda 48.9 5.55e-4   NR XP_013302916.2 51031 g27702 i0 39.1 1.44303797468354 64 36 59.8 2 277 89 179 240 XP_013302916.2 hypothetical protein RB195_002921 [Necator americanus] diamond 456 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
28452102 28452102 PRJNA700095_P_NODE_17186_length_436_cov_2.377410_g15923_i0 PRJNA700095 17186 436 2.37741 10.3655076 Metazoa 33208 Nematoda Nematoda 209 1.99e-61   NR ULT98270.1 6238 g15923 i0 65.1 10.8371559633028 146 49 99.1 2 1 432 444 589 ULT98270.1 hypothetical protein L3Y34_005821 [Caenorhabditis briggsae] diamond 4725 211 0.990521327014218 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
28503883 28503883 PRJNA700095_P_NODE_10227_length_608_cov_2.013084_g8993_i0 PRJNA700095 10227 608 2.013084 12.23955072 Onchocerca ochengi 42157 Nematoda Nematoda 166 5.289999999999999e-48   NR VDN00135.1 42157 g8993 i0 73.6 0.991776315789474 201 53 99.2 0 5 607 5 205 VDN00135.1 unnamed protein product, partial [Onchocerca ochengi] diamond 603 166 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca ochengi
28724943 28724943 PRJNA700095_P_NODE_27267_length_327_cov_1.574803_g26003_i0 PRJNA700095 27267 327 1.574803 5.14960581 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 43.9 0.036   NR CAD5231499.1 6326 g26003 i0 54.8 0.284403669724771 31 14 28.4 0 221 129 27 57 CAD5231499.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 93 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
29020554 29020554 PRJNA700095_P_NODE_13468_length_513_cov_2.213636_g12213_i0 PRJNA700095 13468 513 2.213636 11.35595268 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.1 1.09e-17   NR XP_042929296.1 6279 g12213 i0 48.8 5.39766081871345 84 43 49.1 0 511 260 286 369 XP_042929296.1 splicing factor, CC1-like family protein [Brugia malayi] diamond 2769 90.9 0.991199119911991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
29798313 29798313 PRJNA700095_P_NODE_10771_length_589_cov_2.639535_g9531_i0 PRJNA700095 10771 589 2.639535 15.54686115 Steinernema hermaphroditum 289476 Nematoda Nematoda 78.6 4.65e-13   NR KAK0401820.1 289476 g9531 i0 34.1 2.69949066213922 132 82 65.2 2 585 202 961 1091 KAK0401820.1 hypothetical protein QR680_015990 [Steinernema hermaphroditum] diamond 1590 78.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
30841083 30841083 PRJNA700095_P_NODE_16894_length_441_cov_1.024457_g15631_i0 PRJNA700095 16894 441 1.024457 4.51785537 Anisakis simplex 6269 Nematoda Nematoda 70.5 3.02e-11   NR VDK58758.1 6269 g15631 i0 41.4 0.938775510204082 70 41 47.6 0 215 424 51 120 VDK58758.1 unnamed protein product [Anisakis simplex] diamond 414 70.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
31979260 31979260 PRJNA700095_P_NODE_16098_length_456_cov_1.344648_g14835_i0 PRJNA700095 16098 456 1.344648 6.13159488 Haemonchus placei 6290 Nematoda Nematoda 120 1.42e-30   NR VDO43976.1 6290 g14835 i0 50.4 81.7631578947368 121 49 78.3 2 78 434 27 138 VDO43976.1 unnamed protein product [Haemonchus placei] diamond 37284 120 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus placei
32011027 32011027 PRJNA700095_P_NODE_32278_length_300_cov_3.202643_g31014_i0 PRJNA700095 32278 300 3.202643 9.607929 Aphelenchoides avenae 70226 Nematoda Nematoda 65.1 9.2e-11   NR KAH7715393.1 70226 g31014 i0 56.6 1.02 53 22 53 1 242 84 9 60 KAH7715393.1 hypothetical protein AAVH_17227, partial [Aphelenchoides avenae] diamond 306 65.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
32327794 32327794 PRJNA700095_P_NODE_24499_length_348_cov_1.680000_g23235_i0 PRJNA700095 24499 348 1.68 5.8464 Gnathostoma spinigerum 75299 Nematoda Nematoda 79 2.46e-14   NR MFH4976620.1 75299 g23235 i0 43.9 4.68965517241379 107 57 92.2 3 343 23 142 245 MFH4976620.1 hypothetical protein [Gnathostoma spinigerum] diamond 1632 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
32402004 32402004 PRJNA700095_P_NODE_68819_length_228_cov_3.303226_g67554_i0 PRJNA700095 68819 228 3.303226 7.53135528 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.5 1.68e-8   NR KAK0400478.1 289476 g67554 i0 60 2.34210526315789 45 18 59.2 0 92 226 102 146 KAK0400478.1 hypothetical protein QR680_015269 [Steinernema hermaphroditum] diamond 534 58.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
32485794 32485794 PRJNA700095_P_NODE_50179_length_253_cov_1.322222_g48915_i0 PRJNA700095 50179 253 1.322222 3.34522166 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 42.4 0.0487   NR KAE9551586.1 2598192 g48915 i0 32.1 0.924901185770751 78 39 75.9 3 2 193 147 224 KAE9551586.1 hypothetical protein FO519_005193 [Halicephalobus sp. NKZ332] diamond 234 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
32623028 32623028 PRJNA700095_P_NODE_64260_length_242_cov_0.905325_g62996_i0 PRJNA700095 64260 242 0.905325 2.1908865 Metazoa 33208 Nematoda Nematoda 53.9 4.27e-6   NR EFP13371.1 31234 g62996 i0 42.7 6.45867768595041 75 39 93 2 242 18 673 743 EFP13371.1 CRE-EMB-4 protein [Caenorhabditis remanei] diamond 1563 54.3 0.992633517495396 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;