RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA700095", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA700095 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27177361 27177361 PRJNA700095_P_NODE_39922_length_276_cov_1.497537_g38658_i0 PRJNA700095 39922 276 1.497537 4.13320212 SR1 bacterium human oral taxon HOT-345 1540874 Bacteria Bacteria 87.8 7.73e-18   NR RAL57256.1 1540874 g38658 i0 100 0.478260869565217 44 0 47.8 0 143 274 1 44 RAL57256.1 hypothetical protein BSK20_03195 [SR1 bacterium human oral taxon HOT-345] diamond 132 87.8 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         SR1 bacterium human oral taxon HOT-345

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;