RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA700095", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA700095 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8336512 8336512 PRJNA700095_P_NODE_62287_length_243_cov_0.905882_g61023_i0 PRJNA700095 62287 243 0.905882 2.20129326 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 62.1 3.64e-5   NTclustered gi|470405280|ref|XM_004335798.1| 1257118 g61023 i0 100 0.135802469135802 33 0 14 0 22 54 162 130 Acanthamoeba castellanii str. Neff RNA binding motif containing protein (ACA1_076860), partial mRNA blastn 33 62.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11387838 11387838 PRJNA700095_P_NODE_69609_length_222_cov_5.046980_g68344_i0 PRJNA700095 69609 222 5.04698 11.2042956 Acanthamoeba 5754 Discosea other_Eukaryota 411 2.8199999999999996e-110   NTclustered gi|1776318159|gb|MN700286.1| 5755 g68344 i0 100 100 222 0 100 0 1 222 232 11 Acanthamoeba castellanii isolate PD8-B17 small subunit ribosomal RNA gene, partial sequence blastn 22200 411 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28156826 28156826 PRJNA700095_P_NODE_53745_length_249_cov_0.875000_g52481_i0 PRJNA700095 53745 249 0.875 2.17875 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 77 9e-16   NR XP_004351555.1 1257118 g52481 i0 50 2.74698795180723 76 38 91.6 0 249 22 44 119 XP_004351555.1 LSM domain containing protein [Acanthamoeba castellanii str. Neff] diamond 684 77 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28787883 28787883 PRJNA700095_P_NODE_33167_length_296_cov_2.062780_g31903_i0 PRJNA700095 33167 296 2.06278 6.1058288 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 115 1.82e-29   NR XP_004367559.1 1257118 g31903 i0 57.9 0.77027027027027 76 32 77 0 3 230 128 203 XP_004367559.1 Emopamil binding protein [Acanthamoeba castellanii str. Neff] diamond 228 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29261465 29261465 PRJNA700095_P_NODE_24629_length_347_cov_1.656934_g23365_i0 PRJNA700095 24629 347 1.656934 5.74956098 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 44.7 0.0209   NR XP_004356605.1 1257118 g23365 i0 44.9 0.423631123919308 49 25 42.4 1 218 72 90 136 XP_004356605.1 Fbox domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 44.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29703322 29703322 PRJNA700095_P_NODE_31930_length_302_cov_2.008734_g30666_i0 PRJNA700095 31930 302 2.008734 6.06637668 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 106 1.12e-24   NR XP_004335183.1 1257118 g30666 i0 50.5 1.96688741721854 99 40 98.3 1 5 301 295 384 XP_004335183.1 betalactamase [Acanthamoeba castellanii str. Neff] diamond 594 106 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30725786 30725786 PRJNA700095_P_NODE_36374_length_285_cov_1.853774_g35110_i0 PRJNA700095 36374 285 1.853774 5.2832559 root 1 Root_unresolved Root_unresolved 95.1 1.56e-20   NR XP_004335183.1 1257118 g35110 i0 50.5 1.84210526315789 97 43 98.9 3 285 4 112 206 XP_004335183.1 betalactamase [Acanthamoeba castellanii str. Neff] diamond 525 95.9 0.991657977059437 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32454198 32454198 PRJNA700095_P_NODE_10219_length_608_cov_3.063551_g8985_i0 PRJNA700095 10219 608 3.063551 18.62639008 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 213 2.7300000000000002e-65   NR XP_004352934.1 1257118 g8985 i0 59.7 0.942434210526316 191 57 84.9 4 91 606 1 190 XP_004352934.1 citrin, putative [Acanthamoeba castellanii str. Neff] diamond 573 213 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;