RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA699078" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA699078 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27714953 27714953 PRJNA699078_S_NODE_109524_length_156_cov_2.429907_g108575_i0 PRJNA699078 109524 156 2.429907 3.79065492 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 62 1.85e-9   NR MEC8928922.1 2026799 g108575 i0 54 4.98076923076923 50 23 96.2 0 150 1 509 558 MEC8928922.1 arginine--tRNA ligase [Verrucomicrobiota bacterium] diamond 777 62 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29798307 29798307 PRJNA699078_S_NODE_105211_length_164_cov_0.904348_g104262_i0 PRJNA699078 105211 164 0.904348 1.48313072 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.0125   NR MDQ6626063.1 2026799 g104262 i0 46.2 0.713414634146341 39 21 71.3 0 14 130 43 81 MDQ6626063.1 sulfotransferase domain-containing protein [Verrucomicrobiota bacterium] diamond 117 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30473191 30473191 PRJNA699078_S_NODE_21493_length_363_cov_4.426752_g20544_i0 PRJNA699078 21493 363 4.426752 16.06910976 Pseudomonadati 3379134 Bacteria Bacteria 77.8 3.3e-14   NR MBL9129324.1 2026801 g20544 i0 37 4.05785123966942 100 59 80.2 3 363 73 63 161 MBL9129324.1 redoxin domain-containing protein [Verrucomicrobiales bacterium] diamond 1473 77.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31473363 31473363 PRJNA699078_S_NODE_37536_length_282_cov_3.497854_g36587_i0 PRJNA699078 37536 282 3.497854 9.86394828 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 80.9 2.34e-15   NR MBG89631.1 2026801 g36587 i0 44.4 0.957446808510638 90 48 93.6 1 19 282 467 556 MBG89631.1 glutamine--tRNA ligase [Verrucomicrobiales bacterium] diamond 270 80.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;