RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA699078" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA699078 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27378643 27378643 PRJNA699078_S_NODE_107003_length_162_cov_3.849558_g106054_i0 PRJNA699078 107003 162 3.849558 6.23628396 Bacteria 2 Bacteria Bacteria 55.1 4.19e-7   NR WP_155317845.1 571177 g106054 i0 57.1 10.9074074074074 42 17 77.8 1 157 32 209 249 WP_155317845.1 SDR family NAD(P)-dependent oxidoreductase [Desulfosarcina alkanivorans] diamond 1767 55.5 0.992792792792793 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina alkanivorans
30272592 30272592 PRJNA699078_S_NODE_61412_length_216_cov_1.461078_g60463_i0 PRJNA699078 61412 216 1.461078 3.15592848 Desulfovibrio psychrotolerans 415242 Bacteria Bacteria 82 2.28e-17   NR WP_174409422.1 415242 g60463 i0 61.9 1.81944444444444 63 24 87.5 0 214 26 84 146 WP_174409422.1 rubrerythrin [Desulfovibrio psychrotolerans] diamond 393 82 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio psychrotolerans
31473364 31473364 PRJNA699078_S_NODE_44356_length_258_cov_3.148325_g43407_i0 PRJNA699078 44356 258 3.148325 8.1226785 Desulfobaculum sp. SPO524 3378071 Bacteria Bacteria 45.1 0.00648   NR WP_404845161.1 3378071 g43407 i0 35.8 0.779069767441861 67 30 77.9 2 227 27 307 360 WP_404845161.1 iron-containing alcohol dehydrogenase [Desulfobaculum sp. SPO524] diamond 201 45.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfobaculum Desulfobaculum sp. SPO524

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;