RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA699078" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA699078 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30714580 30714580 PRJNA699078_S_NODE_107474_length_162_cov_1.380531_g106525_i0 PRJNA699078 107474 162 1.380531 2.23646022 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 58.2 4.22e-8   NR HXE60926.1 2026741 g106525 i0 53.3 3.37037037037037 45 21 83.3 0 3 137 102 146 HXE60926.1 selenide, water dikinase SelD [Gemmatimonadaceae bacterium] diamond 546 58.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31927241 31927241 PRJNA699078_S_NODE_16097_length_405_cov_2.497191_g15155_i0 PRJNA699078 16097 405 2.497191 10.11362355 root 1 Root_unresolved Root_unresolved 79 2.26e-14   NR MEO6447435.1 2026741 g15155 i0 38 7.60740740740741 129 59 95.6 3 12 398 201 308 MEO6447435.1 GDP-mannose 4,6-dehydratase [Gemmatimonadaceae bacterium] diamond 3081 79 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32800685 32800685 PRJNA699078_S_NODE_82820_length_184_cov_1.925926_g81871_i0 PRJNA699078 82820 184 1.925926 3.54370384 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42 0.0152   NR MBW7933743.1 2026741 g81871 i0 45.5 0.717391304347826 44 23 70.1 1 12 140 21 64 MBW7933743.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 132 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;