RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA699078", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Campylobacterota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA699078 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3735924 3735924 PRJNA699078_S_NODE_86883_length_180_cov_1.015267_g85934_i0 PRJNA699078 86883 180 1.015267 1.8274806 Helicobacter 209 Bacteria Bacteria 327 2.2699999999999996e-85   NTclustered gi|2157106196|dbj|AP025196.1| 213 g85934 i0 99.444 136.744444444444 180 1 100 0 1 180 137075 137254 Helicobacter cinaedi T36 DNA, complete genome blastn 24614 327 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
5012395 5012395 PRJNA699078_S_NODE_39664_length_274_cov_2.915556_g38715_i0 PRJNA699078 39664 274 2.915556 7.98862344 Helicobacter 209 Bacteria Bacteria 507 4.47e-139   NTclustered gi|50957158|gb|AY596243.1| 32025 g38715 i0 100 135.956204379562 274 0 100 0 1 274 1353 1626 Helicobacter hepaticus strain MIT Hh-2 23S ribosomal RNA gene, partial sequence blastn 37252 507 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter hepaticus
11387674 11387674 PRJNA699078_S_NODE_33049_length_300_cov_3.677291_g32100_i0 PRJNA699078 33049 300 3.677291 11.031873 Arcobacter 28196 Bacteria Bacteria 52.8 0.028   NTclustered gi|1847331607|gb|CP053835.1| 873191 g32100 i0 100 0.186666666666667 28 0 9 0 172 199 2296400 2296427 Arcobacter defluvii strain LMG 25694 chromosome, complete genome blastn 56 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter defluvii
15985007 15985007 PRJNA699078_S_NODE_50733_length_240_cov_1.612565_g49784_i0 PRJNA699078 50733 240 1.612565 3.870156 Sulfurimonas sp. SWIR-19 2878390 Bacteria Bacteria 52.8 0.022   NTclustered gi|2111132204|gb|CP084578.1| 2878390 g49784 i0 100 0.116666666666667 28 0 12 0 196 223 407469 407442 Sulfurimonas sp. SWIR-19 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp. SWIR-19
16487043 16487043 PRJNA699078_S_NODE_14773_length_418_cov_1.268293_g13835_i0 PRJNA699078 14773 418 1.268293 5.30146474 Helicobacter 209 Bacteria Bacteria 773 0   NTclustered gi|50957158|gb|AY596243.1| 32025 g13835 i0 100 128.047846889952 418 0 100 0 1 418 1071 654 Helicobacter hepaticus strain MIT Hh-2 23S ribosomal RNA gene, partial sequence blastn 53524 773 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter hepaticus
17260322 17260322 PRJNA699078_S_NODE_55454_length_229_cov_0.988889_g54505_i0 PRJNA699078 55454 229 0.988889 2.26455581 Helicobacter hepaticus 32025 Bacteria Bacteria 418 1.7499999999999995e-112   NTclustered gi|32263428|gb|AE017125.1| 235279 g54505 i0 99.563 27.4934497816594 229 1 100 0 1 229 360251 360023 Helicobacter hepaticus ATCC 51449, complete genome blastn 6296 418 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter hepaticus
32748998 32748998 PRJNA699078_S_NODE_98280_length_168_cov_1.747899_g97331_i0 PRJNA699078 98280 168 1.747899 2.93647032 Campylobacterales 213849 Bacteria Bacteria 56.6 1.68e-7   NR WP_027305268.1 374106 g97331 i0 51.8 34.9107142857143 56 20 87.5 1 160 14 271 326 WP_027305268.1 molecular chaperone HtpG [Campylobacter cuniculorum] diamond 5865 57 0.992982456140351 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter cuniculorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;