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contig_metadata

21 rows where bioproject = "PRJNA699078" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 21 ✖

tax_kingdom 1

bioproject 1

  • PRJNA699078 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1184124 1184124 PRJNA699078_S_NODE_49241_length_244_cov_1.579487_g48292_i0 PRJNA699078 49241 244 1.579487 3.85394828 Cutibacterium 1912216 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1446500593|gb|CP031442.1| 1747 g48292 i0 100 287.549180327869 244 0 100 0 1 244 55726 55969 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 70162 451 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
3735915 3735915 PRJNA699078_S_NODE_67243_length_206_cov_0.993631_g66294_i0 PRJNA699078 67243 206 0.993631 2.04687986 Brevibacterium 1696 Bacteria Bacteria 381 2.0199999999999994e-101   NTclustered gi|1943100173|gb|CP065629.1| 33889 g66294 i0 100 346.058252427184 206 0 100 0 1 206 599203 599408 Brevibacterium casei strain FDAARGOS_937 chromosome, complete genome blastn 71288 381 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei
5786262 5786262 PRJNA699078_S_NODE_78165_length_190_cov_1.446809_g77216_i0 PRJNA699078 78165 190 1.446809 2.7489371 Brevibacterium casei 33889 Bacteria Bacteria 351 1.4399999999999997e-92   NTclustered gi|1943100173|gb|CP065629.1| 33889 g77216 i0 100 342.031578947368 190 0 100 0 1 190 598410 598599 Brevibacterium casei strain FDAARGOS_937 chromosome, complete genome blastn 64986 351 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei
11387693 11387693 PRJNA699078_S_NODE_70169_length_201_cov_1.638158_g69220_i0 PRJNA699078 70169 201 1.638158 3.29269758 Cutibacterium 1912216 Bacteria Bacteria 372 1.18e-98   NTclustered gi|1446500593|gb|CP031442.1| 1747 g69220 i0 100 209.164179104478 201 0 100 0 1 201 56946 57146 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 42042 372 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
11387698 11387698 PRJNA699078_S_NODE_92049_length_174_cov_1.408000_g91100_i0 PRJNA699078 92049 174 1.408 2.44992 Kocuria 57493 Bacteria Bacteria 322 1.01e-83   NTclustered gi|923033569|gb|CP012507.1| 71999 g91100 i0 100 297.551724137931 174 0 100 0 1 174 219838 219665 Kocuria palustris strain MU14/1, complete genome blastn 51774 322 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria palustris
12663605 12663605 PRJNA699078_S_NODE_32070_length_305_cov_1.355469_g31121_i0 PRJNA699078 32070 305 1.355469 4.13418045 Cutibacterium 1912216 Bacteria Bacteria 518 2.33e-142   NTclustered gi|1446500593|gb|CP031442.1| 1747 g31121 i0 100 246.255737704918 280 0 92 0 1 280 56493 56214 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 75108 518 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
17259518 17259518 PRJNA699078_S_NODE_101494_length_166_cov_1.333333_g100545_i0 PRJNA699078 101494 166 1.333333 2.21333278 Aeromicrobium chenweiae 2079793 Bacteria Bacteria 67.6 4.96e-7   NTclustered gi|1380481754|gb|CP026952.1| 2079793 g100545 i0 95.238 0.427710843373494 42 2 25 0 7 48 1343662 1343703 Aeromicrobium chenweiae strain 592 chromosome, complete genome blastn 71 67.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium chenweiae
20310424 20310424 PRJNA699078_S_NODE_105496_length_163_cov_2.771930_g104547_i0 PRJNA699078 105496 163 2.77193 4.5182459 Cutibacterium 1912216 Bacteria Bacteria 302 1.22e-77   NTclustered gi|1446500593|gb|CP031442.1| 1747 g104547 i0 100 256.159509202454 163 0 100 0 1 163 55547 55709 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 41754 302 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
28187902 28187902 PRJNA699078_S_NODE_104486_length_164_cov_1.356522_g103537_i0 PRJNA699078 104486 164 1.356522 2.22469608 Nostocoides jenkinsii 330834 Bacteria Bacteria 64.7 3.44e-11   NR WP_157038630.1 330834 g103537 i0 60 1.00609756097561 55 18 97 2 164 6 108 160 WP_157038630.1 hypothetical protein [Nostocoides jenkinsii] diamond 165 64.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Nostocoides Nostocoides jenkinsii
28282651 28282651 PRJNA699078_S_NODE_74206_length_195_cov_2.493151_g73257_i0 PRJNA699078 74206 195 2.493151 4.86164445 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 40.8 0.0443   NR HVB51544.1 2201156 g73257 i0 34.4 0.938461538461538 61 39 93.8 1 13 195 35 94 HVB51544.1 hypothetical protein [Acidimicrobiales bacterium] diamond 183 40.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28377491 28377491 PRJNA699078_S_NODE_17766_length_390_cov_6.797654_g16819_i0 PRJNA699078 17766 390 6.797654 26.5108506 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 82.4 2.4e-15   NR HMG42021.1 2201156 g16819 i0 43.8 2.58461538461538 112 45 86.2 3 389 54 458 551 HMG42021.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Acidimicrobiales bacterium] diamond 1008 82.4 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28630408 28630408 PRJNA699078_S_NODE_59707_length_219_cov_3.323529_g58758_i0 PRJNA699078 59707 219 3.323529 7.27852851 Kitasatospora acidiphila 2567942 Bacteria Bacteria 64.3 3.4e-10   NR WP_141637006.1 2567942 g58758 i0 53.1 0.876712328767123 64 22 87.7 1 8 199 194 249 WP_141637006.1 SDR family NAD(P)-dependent oxidoreductase [Kitasatospora acidiphila] diamond 192 64.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora acidiphila
29336039 29336039 PRJNA699078_S_NODE_15269_length_413_cov_1.406593_g14330_i0 PRJNA699078 15269 413 1.406593 5.80922909 Streptomyces 1883 Bacteria Bacteria 48.5 0.00213   NR WP_061916789.1 285568 g14330 i0 52.4 2.32445520581114 42 20 30.5 0 4 129 581 622 WP_061916789.1 AMP-dependent synthetase/ligase [Streptomyces bungoensis] diamond 960 48.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces bungoensis
29482442 29482442 PRJNA699078_S_NODE_82930_length_184_cov_1.629630_g81981_i0 PRJNA699078 82930 184 1.62963 2.9985192 Amycolatopsis acididurans 2724524 Bacteria Bacteria 45.4 8.03e-4   NR WP_168521232.1 2724524 g81981 i0 46.2 0.635869565217391 39 21 63.6 0 183 67 103 141 WP_168521232.1 DUF6314 family protein [Amycolatopsis acididurans] diamond 117 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis acididurans
29588277 29588277 PRJNA699078_S_NODE_106590_length_163_cov_0.912281_g105641_i0 PRJNA699078 106590 163 0.912281 1.48701803 Bacillati 1783272 Bacteria Bacteria 64.7 2e-10   NR MDT5389383.1 1785 g105641 i0 55.6 31.8220858895706 54 23 97.5 1 159 1 112 165 MDT5389383.1 molecular chaperone DnaK [Mycobacterium sp.] diamond 5187 65.1 0.993855606758833 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
29640213 29640213 PRJNA699078_S_NODE_98310_length_168_cov_1.722689_g97361_i0 PRJNA699078 98310 168 1.722689 2.89411752 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 41.6 0.0168   NR HEY8638455.1 2586742 g97361 i0 39.6 0.857142857142857 48 29 85.7 0 23 166 72 119 HEY8638455.1 SDR family oxidoreductase [Solirubrobacteraceae bacterium] diamond 144 41.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29766699 29766699 PRJNA699078_S_NODE_42931_length_263_cov_2.317757_g41982_i0 PRJNA699078 42931 263 2.317757 6.09570091 Coriobacteriales bacterium 2478480 Bacteria Bacteria 64.3 1.98e-11   NR MDR0308671.1 2478480 g41982 i0 48 1.18631178707224 50 26 57 0 19 168 1 50 MDR0308671.1 ricin-type beta-trefoil lectin domain protein [Coriobacteriales bacterium] diamond 312 64.3 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales     Coriobacteriales bacterium
30525027 30525027 PRJNA699078_S_NODE_73753_length_196_cov_1.414966_g72804_i0 PRJNA699078 73753 196 1.414966 2.77333336 Actinomycetota bacterium 2900548 Bacteria Bacteria 52.8 4.71e-6   NR MDA8062228.1 2900548 g72804 i0 36.1 0.933673469387755 61 36 88.8 1 10 183 42 102 MDA8062228.1 class I SAM-dependent methyltransferase [Actinomycetota bacterium] diamond 183 52.8 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30967541 30967541 PRJNA699078_S_NODE_57074_length_225_cov_1.448864_g56125_i0 PRJNA699078 57074 225 1.448864 3.259944 Actinomyces minihominis 2002838 Bacteria Bacteria 67.8 4.37e-11   NR WP_099331912.1 2002838 g56125 i0 47.8 2.81333333333333 67 34 88 1 213 16 353 419 WP_099331912.1 UTP--glucose-1-phosphate uridylyltransferase [Actinomyces minihominis] diamond 633 67.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces minihominis
31124994 31124994 PRJNA699078_S_NODE_82735_length_184_cov_2.311111_g81786_i0 PRJNA699078 82735 184 2.311111 4.25244424 Mycolicibacterium moriokaense 39691 Bacteria Bacteria 43.9 0.00684   NR WP_110317104.1 39691 g81786 i0 38.3 0.766304347826087 47 29 76.6 0 16 156 321 367 WP_110317104.1 thioester reductase domain-containing protein [Mycolicibacterium moriokaense] diamond 141 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium moriokaense
31389694 31389694 PRJNA699078_S_NODE_79156_length_189_cov_1.114286_g78207_i0 PRJNA699078 79156 189 1.114286 2.10600054 root 1 Root_unresolved Root_unresolved 58.5 4.38e-9   NR MDO4928303.1 1720 g78207 i0 48.4 24.3333333333333 62 31 98.4 1 4 189 45 105 MDO4928303.1 iron-sulfur cluster assembly accessory protein [Corynebacterium sp.] diamond 4599 58.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;