RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA699078" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 5 ✖

bioproject 1

  • PRJNA699078 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3233953 3233953 PRJNA699078_S_NODE_92523_length_173_cov_7.395161_g91574_i0 PRJNA699078 92523 173 7.395161 12.79362853 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.015   NTclustered gi|323706731|gb|CP002529.1| 985053 g91574 i0 100 0.161849710982659 28 0 16 0 3 30 336127 336100 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
15985572 15985572 PRJNA699078_S_NODE_90193_length_176_cov_1.385827_g89244_i0 PRJNA699078 90193 176 1.385827 2.43905552 Nitrosopumilus sp. 2024843 Archaea Archaea 77 1.23e-14   NR MEO2220332.1 2024843 g89244 i0 60.7 1.90909090909091 56 22 95.5 0 6 173 354 409 MEO2220332.1 reverse transcriptase family protein [Nitrosopumilus sp.] diamond 336 77 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
15985618 15985618 PRJNA699078_S_NODE_93653_length_172_cov_2.227642_g92704_i0 PRJNA699078 93653 172 2.227642 3.83154424 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.014   NTclustered gi|323706731|gb|CP002529.1| 985053 g92704 i0 100 0.162790697674419 28 0 16 0 143 170 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
28977644 28977644 PRJNA699078_S_NODE_48288_length_247_cov_1.050505_g47339_i0 PRJNA699078 48288 247 1.050505 2.59474735 Thermoproteota archaeon 2056631 Archaea Archaea 41.6 0.0346   NR MEM2841913.1 2056631 g47339 i0 44.7 0.57085020242915 47 22 57.1 2 81 221 3 45 MEM2841913.1 Sjogren's syndrome/scleroderma autoantigen 1 family protein [Thermoproteota archaeon] diamond 141 41.6 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30904324 30904324 PRJNA699078_S_NODE_73394_length_196_cov_4.244898_g72445_i0 PRJNA699078 73394 196 4.244898 8.32000008 Desulfurococcaceae archaeon 2184738 Archaea Archaea 68.2 9.17e-13   NR MEM4769798.1 2184738 g72445 i0 47.7 3.97959183673469 65 34 99.5 0 2 196 56 120 MEM4769798.1 translation initiation factor IF-2 subunit beta [Desulfurococcaceae archaeon] diamond 780 68.2 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae   Desulfurococcaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;