RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA699078", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA699078 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29072403 29072403 PRJNA699078_S_NODE_22128_length_359_cov_4.583871_g21179_i0 PRJNA699078 22128 359 4.583871 16.45609689 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 63.9 4.56e-9   NR NOY54137.1 2026735 g21179 i0 45.3 2.47353760445682 75 36 60.2 4 6 221 287 359 NOY54137.1 NADH:flavin oxidoreductase [Deltaproteobacteria bacterium] diamond 888 63.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31757836 31757836 PRJNA699078_S_NODE_64197_length_211_cov_1.283951_g63248_i0 PRJNA699078 64197 211 1.283951 2.70913661 Myxococcota bacterium 2818507 Bacteria Bacteria 52 8.76e-6   NR MDP7113790.1 2818507 g63248 i0 50 5.41706161137441 64 29 89.6 2 3 191 161 222 MDP7113790.1 PfkB family carbohydrate kinase [Myxococcota bacterium] diamond 1143 52 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32895160 32895160 PRJNA699078_S_NODE_71100_length_200_cov_1.033113_g70151_i0 PRJNA699078 71100 200 1.033113 2.066226 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 40.8 0.0236   NR MBW1819838.1 2026735 g70151 i0 39.3 0.84 56 33 82.5 1 22 186 7 62 MBW1819838.1 signal peptidase I [Deltaproteobacteria bacterium] diamond 168 40.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;