RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA699078", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA699078 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14710914 14710914 PRJNA699078_S_NODE_24472_length_344_cov_5.420339_g23523_i0 PRJNA699078 24472 344 5.420339 18.64596616 Pseudomonadati 3379134 Bacteria Bacteria 151 4.12e-41   NR OFV91397.1 1797173 g23523 i0 69.8 6.50581395348837 106 32 92.4 0 8 325 347 452 OFV91397.1 MAG: glutamate dehydrogenase [Acidobacteria bacterium RBG_16_68_9] diamond 2238 151 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteria bacterium RBG_16_68_9
31916016 31916016 PRJNA699078_S_NODE_10637_length_468_cov_18.458234_g9725_i0 PRJNA699078 10637 468 18.458234 86.38453512 Acidobacteriota bacterium 1978231 Bacteria Bacteria 202 2.6299999999999996e-57   NR MBP7867018.1 1978231 g9725 i0 66 2.70512820512821 141 47 89.7 1 2 421 319 459 MBP7867018.1 pre-peptidase C-terminal domain-containing protein [Acidobacteriota bacterium] diamond 1266 202 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;