RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA699078", tax_kingdom = "Methanobacteriati" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA699078 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31124992 31124992 PRJNA699078_S_NODE_56935_length_225_cov_2.068182_g55986_i0 PRJNA699078 56935 225 2.068182 4.6534095 Halalkalicoccus 332246 Archaea Archaea 63.2 1.13e-9   NR WP_332101262.1 332246 g55986 i0 43.9 0.88 66 34 88 2 203 6 189 251 WP_332101262.1 MULTISPECIES: aldo/keto reductase [Halalkalicoccus] diamond 198 63.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus  
32843366 32843366 PRJNA699078_S_NODE_29760_length_316_cov_1.116105_g28811_i0 PRJNA699078 29760 316 1.116105 3.5268918 Archaea 2157 Archaea Archaea 115 4.46e-28   NR HML05280.1 2164 g28811 i0 53.8 2.91455696202532 104 46 97.8 2 315 7 77 179 HML05280.1 glycine--tRNA ligase [Methanobacterium sp.] diamond 921 115 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;