RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA699078", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA699078 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10887138 10887138 PRJNA699078_S_NODE_98169_length_168_cov_2.184874_g97220_i0 PRJNA699078 98169 168 2.184874 3.67058832 Haplosporidium littoralis 1296328 SAR_Eukaryotes SAR_Eukaryotes 97.1 6.43e-16   NTclustered gi|605052145|gb|KJ150289.1| 1296328 g97220 i0 86.17 1.94642857142857 94 8 55 4 1 92 4013 4103 Haplosporidium littoralis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 327 97.1 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida Haplosporidiidae Haplosporidium Haplosporidium littoralis
32717569 32717569 PRJNA699078_S_NODE_42300_length_265_cov_2.625000_g41351_i0 PRJNA699078 42300 265 2.625 6.95625 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 68.9 2.67e-11   NR CEO98766.1 37360 g41351 i0 47.7 17.2528301886792 86 39 97.4 3 260 3 319 398 CEO98766.1 hypothetical protein PBRA_006880 [Plasmodiophora brassicae] diamond 4572 69.3 0.994227994227994 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;