RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA699078", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA699078 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28125006 28125006 PRJNA699078_S_NODE_63485_length_212_cov_1.705521_g62536_i0 PRJNA699078 63485 212 1.705521 3.61570452 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 57.8 1.26e-7   NR XP_005784462.1 280463 g62536 i0 40 0.919811320754717 65 39 92 0 201 7 1214 1278 XP_005784462.1 hypothetical protein EMIHUDRAFT_202572 [Emiliania huxleyi CCMP1516] diamond 195 57.8 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
29072409 29072409 PRJNA699078_S_NODE_81288_length_186_cov_1.518248_g80339_i0 PRJNA699078 81288 186 1.518248 2.82394128 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 83.6 7.03e-17   NR KAG8467619.1 2081491 g80339 i0 71.2 2.75806451612903 59 15 95.2 1 181 5 246 302 KAG8467619.1 hypothetical protein KFE25_006671 [Diacronema lutheri] diamond 513 83.6 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
32296106 32296106 PRJNA699078_S_NODE_65259_length_209_cov_1.456250_g64310_i0 PRJNA699078 65259 209 1.45625 3.0435625 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 76.6 3.12e-15   NR KAG8461289.1 2081491 g64310 i0 61 12.7464114832536 59 23 84.7 0 208 32 86 144 KAG8461289.1 hypothetical protein KFE25_010476 [Diacronema lutheri] diamond 2664 76.6 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;