RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA698538" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA698538 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17761879 17761879 PRJNA698538_S_NODE_22194_length_272_cov_1.934673_g22028_i0 PRJNA698538 22194 272 1.934673 5.26231056 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 76.3 8.78e-14   NR RHY78209.1 112090 g22028 i0 77.1 11.6360294117647 48 9 52.9 1 123 266 1221 1266 RHY78209.1 hypothetical protein DYB38_002210 [Aphanomyces astaci] diamond 3165 76.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
26766236 26766236 PRJNA698538_S_NODE_21061_length_278_cov_1.765854_g20895_i0 PRJNA698538 21061 278 1.765854 4.90907412 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 65.5 4e-10   NR XP_008604768.1 1156394 g20895 i0 47.2 0.776978417266187 72 37 76.6 1 276 64 233 304 XP_008604768.1 YjeF [Saprolegnia diclina VS20] diamond 216 65.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
30062184 30062184 PRJNA698538_S_NODE_31531_length_227_cov_3.467532_g31365_i0 PRJNA698538 31531 227 3.467532 7.87129764 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.3 1.52e-4   NR DBA01320.1 4803 g31365 i0 49.1 8.08810572687225 53 25 67.4 1 4 156 221 273 DBA01320.1 TPA: hypothetical protein N0F65_001825, partial [Lagenidium giganteum] diamond 1836 49.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;